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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106348512   nuclear nucleic acid-binding protein C1D 
 bna-r.1   106365909   nuclear nucleic acid-binding protein C1D 
 bna-r.1   106410889   nuclear nucleic acid-binding protein C1D 
 bna-r.1   106365994   nuclear nucleic acid-binding protein C1D 
 bra-r.6   103874375   nuclear nucleic acid-binding protein C1D 
 bra-r.6   103837076   nuclear nucleic acid-binding protein C1D 
 ath-u.5   AT5G25080   Sas10/Utp3/C1D family 
 ghi-r.1   107958981   nuclear nucleic acid-binding protein C1D 
 ghi-r.1   107906821   nuclear nucleic acid-binding protein C1D 
 cit-r.1   102630867   uncharacterized LOC102630867 
 gma-u.5   100795174   nuclear nucleic acid-binding protein C1D 
 gma-u.5   100500667   uncharacterized LOC100500667 
 vvi-u.5   100243947   uncharacterized LOC100243947 
 ppo-u.5   7465425   uncharacterized LOC7465425 
 ppo-u.5   7489156   uncharacterized LOC7489156 
 mtr-u.5   11432979   uncharacterized LOC11432979 
 mtr-u.5   11431486   nuclear nucleic acid-binding protein C1D 
 sly-u.5   101259554   uncharacterized LOC101259554 
 sot-r.1   102589730   nuclear nucleic acid-binding protein C1D 
 nta-r.1   107828515   uncharacterized LOC107828515 
 nta-r.1   107825425   uncharacterized LOC107825425 
 osa-u.5   4345136   uncharacterized LOC4345136 
 zma-u.5   100277089   uncharacterized LOC100277089 
 tae-r.2   123164912   uncharacterized LOC123164912 
 tae-r.2   123156550   nuclear nucleic acid-binding protein C1D 
 tae-r.2   123149022   nuclear nucleic acid-binding protein C1D 
 hvu-r.1   123407459   nuclear nucleic acid-binding protein C1D 
 sbi-r.1   8067973   nuclear nucleic acid-binding protein C1D 
 bdi-r.1   100834810   nuclear nucleic acid-binding protein C1D 

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Top 50 coexpressed genes to 106348512 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106348512 (bna-r.1 coexpression data)

CoexMap"106348512"


bnaLOC106348512 | Entrez gene ID : 106348512    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 2 1 2 2 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0000460 [list] [network] maturation of 5.8S rRNA  (106 genes)  IEA  
GO:0010468 [list] [network] regulation of gene expression  (6396 genes)  IEA  
GO CC
GO:0000178 [list] [network] exosome (RNase complex)  (51 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (615 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013643716.2 [sequence] [blastp]
XP_022543397.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  nucl_plas 4,  cyto 1,  plas 1,  chlo 1,  mito 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_013643716.2)
nucl 5,  chlo 1,  cyto 1,  mito 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_022543397.2)
Subcellular
localization
TargetP
other 6  (predict for XP_013643716.2)
other 6  (predict for XP_022543397.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106348512
bna-r.1
for
106365909
bna-r.1
for
106410889
bna-r.1
for
106365994
bra-r.6
for
103874375
bra-r.6
for
103837076
ath-u.5
for
AT5G25080
ghi-r.1
for
107958981
ghi-r.1
for
107906821
cit-r.1
for
102630867
gma-u.5
for
100795174
gma-u.5
for
100500667
vvi-u.5
for
100243947
ppo-u.5
for
7465425
ppo-u.5
for
7489156
mtr-u.5
for
11432979
mtr-u.5
for
11431486
sly-u.5
for
101259554
sot-r.1
for
102589730
nta-r.1
for
107828515
nta-r.1
for
107825425
osa-u.5
for
4345136
zma-u.5
for
100277089
tae-r.2
for
123164912
tae-r.2
for
123156550
tae-r.2
for
123149022
hvu-r.1
for
123407459
sbi-r.1
for
8067973
bdi-r.1
for
100834810


Ortholog ID: 7736
Species bna bna bna bra bra ath ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC106365909 LOC106410889 LOC106365994 LOC103874375 LOC103837076 AT5G25080 LOC107958981 LOC107906821 LOC102630867 LOC100795174 LOC100500667 LOC100243947 LOC7465425 LOC7489156 LOC11432979 LOC11431486 LOC101259554 LOC102589730 LOC107828515 LOC107825425 LOC4345136 LOC100277089 LOC123164912 LOC123156550 LOC123149022 LOC123407459 LOC8067973 LOC100834810
Function* nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D Sas10/Utp3/C1D family nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D uncharacterized LOC102630867 nuclear nucleic acid-binding protein C1D uncharacterized LOC100500667 uncharacterized LOC100243947 uncharacterized LOC7465425 uncharacterized LOC7489156 uncharacterized LOC11432979 nuclear nucleic acid-binding protein C1D uncharacterized LOC101259554 nuclear nucleic acid-binding protein C1D uncharacterized LOC107828515 uncharacterized LOC107825425 uncharacterized LOC4345136 uncharacterized LOC100277089 uncharacterized LOC123164912 nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D nuclear nucleic acid-binding protein C1D
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 5
bna03018 RNA degradation 4
bna03015 mRNA surveillance pathway 2
bna00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 4
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03420 Nucleotide excision repair 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi03018 RNA degradation 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 8
ghi04141 Protein processing in endoplasmic reticulum 8
ghi03050 Proteasome 7
ghi03018 RNA degradation 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit00300 Lysine biosynthesis 2
cit01230 Biosynthesis of amino acids 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 11
gma00710 Carbon fixation by Calvin cycle 10
gma00010 Glycolysis / Gluconeogenesis 9
gma01230 Biosynthesis of amino acids 7
gma00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00790 Folate biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr00240 Pyrimidine metabolism 2
mtr01232 Nucleotide metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03082 ATP-dependent chromatin remodeling 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03018 RNA degradation 2
nta00061 Fatty acid biosynthesis 2
nta00062 Fatty acid elongation 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04122 Sulfur relay system 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03008 Ribosome biogenesis in eukaryotes 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106365909 106410889 106365994 103874375 103837076 832579 107958981 107906821 102630867 100795174 100500667 100243947 7465425 7489156 11432979 11431486 101259554 102589730 107828515 107825425 4345136 100277089 123164912 123156550 123149022 123407459 8067973 100834810
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