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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106348678   protein ALWAYS EARLY 1-like 
 bna-r.1   125597701   protein ALWAYS EARLY 3-like 
 bna-r.1   111207552   protein ALWAYS EARLY 1 
 bna-r.1   125581865   protein ALWAYS EARLY 1-like 
 bra-r.6   103854663   protein ALWAYS EARLY 1 
 bra-r.6   103874522   protein ALWAYS EARLY 1 
 bra-r.6   103870828   protein ALWAYS EARLY 2 
 ath-u.5   ALY2   ALWAYS EARLY 2 
 ath-u.5   ALY3   DNA binding protein 
 ath-u.5   ALY1   protein ALWAYS EARLY 1 
 ghi-r.1   107930936   protein ALWAYS EARLY 2 
 ghi-r.1   107938292   protein ALWAYS EARLY 3 
 ghi-r.1   121214484   protein ALWAYS EARLY 3-like 
 cit-r.1   102627497   protein ALWAYS EARLY 3 
 cit-r.1   102623041   protein ALWAYS EARLY 2 
 gma-u.5   100781646   protein ALWAYS EARLY 3 
 gma-u.5   100811517   protein ALWAYS EARLY 3 
 vvi-u.5   100266555   protein ALWAYS EARLY 2 
 vvi-u.5   100261468   protein ALWAYS EARLY 3 
 ppo-u.5   7473283   protein ALWAYS EARLY 2 
 ppo-u.5   7475371   protein ALWAYS EARLY 3 
 ppo-u.5   18098701   rab escort protein 1 
 mtr-u.5   11415119   protein ALWAYS EARLY 3 
 mtr-u.5   11426420   protein ALWAYS EARLY 2 
 sly-u.5   101265115   protein ALWAYS EARLY 3-like 
 sly-u.5   101249204   protein ALWAYS EARLY 3 
 sot-r.1   102604074   protein ALWAYS EARLY 3-like 
 sot-r.1   102595287   protein ALWAYS EARLY 3 
 nta-r.1   107761272   protein ALWAYS EARLY 3 
 nta-r.1   107808192   protein ALWAYS EARLY 3 
 nta-r.1   107810296   protein ALWAYS EARLY 3-like 
 osa-u.5   9272548   protein ALWAYS EARLY 3 
 zma-u.5   100272535   uncharacterized LOC100272535 
 tae-r.2   123119065   protein ALWAYS EARLY 2 
 tae-r.2   123110057   protein ALWAYS EARLY 2 
 tae-r.2   123101943   protein ALWAYS EARLY 2 
 hvu-r.1   123397619   protein ALWAYS EARLY 2-like 
 sbi-r.1   8080794   protein ALWAYS EARLY 2 
 bdi-r.1   100842465   protein ALWAYS EARLY 2 
 cre-r.1   CHLRE_13g570150v5   uncharacterized protein 

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Top 50 coexpressed genes to 106348678 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106348678 (bna-r.1 coexpression data)

CoexMap"106348678"


bnaLOC106348678 | Entrez gene ID : 106348678    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 2 2 3 2 2 2 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051726 [list] [network] regulation of cell cycle  (325 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0017053 [list] [network] transcription repressor complex  (18 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (630 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_022561907.2 [sequence] [blastp]
XP_048617870.1 [sequence] [blastp]
XP_048617871.1 [sequence] [blastp]
XP_048617872.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cysk 1,  cyto 1,  mito 1,  cysk_plas 1  (predict for XP_022561907.2)
chlo 4,  nucl 4,  cysk 1,  cyto 1,  mito 1,  cysk_plas 1  (predict for XP_048617870.1)
chlo 4,  nucl 4,  cysk 1,  cyto 1,  mito 1,  cysk_plas 1  (predict for XP_048617871.1)
chlo 4,  nucl 4,  cysk 1,  cyto 1,  mito 1,  cysk_plas 1  (predict for XP_048617872.1)
Subcellular
localization
TargetP
other 8  (predict for XP_022561907.2)
other 8  (predict for XP_048617870.1)
other 8  (predict for XP_048617871.1)
other 8  (predict for XP_048617872.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106348678
bna-r.1
for
125597701
bna-r.1
for
111207552
bna-r.1
for
125581865
bra-r.6
for
103854663
bra-r.6
for
103874522
bra-r.6
for
103870828
ath-u.5
for
ALY2
ath-u.5
for
ALY3
ath-u.5
for
ALY1
ghi-r.1
for
107930936
ghi-r.1
for
107938292
ghi-r.1
for
121214484
cit-r.1
for
102627497
cit-r.1
for
102623041
gma-u.5
for
100781646
gma-u.5
for
100811517
vvi-u.5
for
100266555
vvi-u.5
for
100261468
ppo-u.5
for
7473283
ppo-u.5
for
7475371
ppo-u.5
for
18098701
mtr-u.5
for
11415119
mtr-u.5
for
11426420
sly-u.5
for
101265115
sly-u.5
for
101249204
sot-r.1
for
102604074
sot-r.1
for
102595287
nta-r.1
for
107761272
nta-r.1
for
107808192
nta-r.1
for
107810296
osa-u.5
for
9272548
zma-u.5
for
100272535
tae-r.2
for
123119065
tae-r.2
for
123110057
tae-r.2
for
123101943
hvu-r.1
for
123397619
sbi-r.1
for
8080794
bdi-r.1
for
100842465
cre-r.1
for
CHLRE_13g570150v5


Ortholog ID: 2550
Species bna bna bna bra bra bra ath ath ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC125597701 LOC125581865 LOC125600808 LOC103854663 LOC103870828 LOC103849006 ALY2 ALY3 ALY1 LOC107930936 LOC121214484 LOC121223460 LOC102627497 LOC102623041 LOC100781646 LOC100816217 LOC100789533 LOC100266555 LOC100261468 LOC7473283 LOC18098701 LOC18101840 LOC11415119 LOC11426420 LOC101265115 LOC101249204 LOC102604074 LOC102595287 LOC107761272 LOC107808192 LOC107810296 LOC9272548 LOC100272535 LOC123119065 LOC123110057 LOC123101943 LOC123397619 LOC8080794 LOC100842465 CHLRE_13g570150v5
Function* protein ALWAYS EARLY 3-like protein ALWAYS EARLY 1-like protein ALWAYS EARLY 1-like protein ALWAYS EARLY 1 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 ALWAYS EARLY 2 DNA binding protein protein ALWAYS EARLY 1 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 rab escort protein 1 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3 protein ALWAYS EARLY 2 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 3 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 3 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3 protein ALWAYS EARLY 3-like protein ALWAYS EARLY 3 uncharacterized LOC100272535 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 protein ALWAYS EARLY 2-like protein ALWAYS EARLY 2 protein ALWAYS EARLY 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 8
bna03420 Nucleotide excision repair 7
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 8
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath03420 Nucleotide excision repair 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 5
ghi03430 Mismatch repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit00562 Inositol phosphate metabolism 2
cit04136 Autophagy - other 2
cit03420 Nucleotide excision repair 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 3
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 5
nta03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
bdi03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125597701 125581865 125600808 103854663 103870828 103849006 819702 821697 832823 107930936 121214484 121223460 102627497 102623041 100781646 100816217 100789533 100266555 100261468 7473283 18098701 18101840 11415119 11426420 101265115 101249204 102604074 102595287 107761272 107808192 107810296 9272548 100272535 123119065 123110057 123101943 123397619 8080794 100842465 66055938
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