ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106354639	TOM1-like protein 4
bna-r.1	106416938	TOM1-like protein 4
bna-r.1	106396612	TOM1-like protein 3
bna-r.1	106377224	TOM1-like protein 4
bra-r.6	103850486	TOM1-like protein 9
bra-r.6	103872973	TOM1-like protein 3
bra-r.6	103834515	TOM1-like protein 9
ath-u.5	AT2G38410	ENTH/VHS/GAT family protein
ath-u.5	AT4G32760	ENTH/VHS/GAT family protein
ghi-r.1	107901553	TOM1-like protein 9
ghi-r.1	107903521	TOM1-like protein 6
ghi-r.1	107905229	TOM1-like protein 4
cit-r.1	102607336	TOM1-like protein 3
cit-r.1	102614457	TOM1-like protein 6
cit-r.1	102619497	TOM1-like protein 9
gma-u.5	732580	VHS and GAT domain protein
gma-u.5	100792343	TOM1-like protein 4
gma-u.5	100788146	TOM1-like protein 9
vvi-u.5	100249280	TOM1-like protein 9
vvi-u.5	100260765	TOM1-like protein 4
vvi-u.5	100267076	TOM1-like protein 6
ppo-u.5	7462937	TOM1-like protein 9
ppo-u.5	7487353	TOM1-like protein 6
ppo-u.5	7469188	TOM1-like protein 3
mtr-u.5	25482251	TOM1-like protein 9
mtr-u.5	25489734	TOM1-like protein 3
mtr-u.5	11432555	TOM1-like protein 6
sly-u.5	101260958	TOM1-like protein 9
sly-u.5	101245325	TOM1-like protein 9
sly-u.5	101245875	TOM1-like protein 6
sot-r.1	102582428	target of Myb protein 1
sot-r.1	102585872	TOM1-like protein 2
sot-r.1	102587814	TOM1-like protein 2
nta-r.1	107791855	TOM1-like protein 6
nta-r.1	107761140	TOM1-like protein 9
nta-r.1	107763152	TOM1-like protein 3
osa-u.5	4350004	TOM1-like protein 3
osa-u.5	4325877	TOM1-like protein 9
osa-u.5	4338463	TOM1-like protein 6
zma-u.5	100281176	VHS and GAT domain protein
zma-u.5	100382593	uncharacterized LOC100382593
zma-u.5	100501156	putative VHS/GAT domain containing family protein
tae-r.2	123060012	TOM1-like protein 6
tae-r.2	123096312	TOM1-like protein 3
tae-r.2	123079601	TOM1-like protein 6
hvu-r.1	123445007	TOM1-like protein 7
hvu-r.1	123444789	TOM1-like protein 6
hvu-r.1	123443250	TOM1-like protein 9
sbi-r.1	8056288	TOM1-like protein 2
sbi-r.1	8078110	target of Myb protein 1
sbi-r.1	8066773	TOM1-like protein 2
bdi-r.1	100820952	TOM1-like protein 3
bdi-r.1	100821721	TOM1-like protein 9
bdi-r.1	100821912	TOM1-like protein 9

Top 50 coexpressed genes to 106354639 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106354639 (bna-r.1 coexpression data)

CoexMap"106354639"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0043328 [list] [network] protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

(56 genes)

IEA

GO CC

GO MF

GO:0035091 [list] [network] phosphatidylinositol binding	(218 genes)	IEA
GO:0043130 [list] [network] ubiquitin binding	(222 genes)	IEA

Protein

XP_013650082.2 [sequence] [blastp]
XP_013650083.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, cyto 1, plas 1, cysk 1, cysk_plas 1, cyto_plas 1	(predict for XP_013650082.2)
nucl 7, chlo 1, cyto 1, plas 1, cysk 1, cysk_plas 1, cyto_plas 1	(predict for XP_013650083.2)

Subcellular
localization
TargetP

other 7	(predict for XP_013650082.2)
other 7	(predict for XP_013650083.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106354639	bna-r.1 for 106416938	bna-r.1 for 106396612	bna-r.1 for 106377224	bra-r.6 for 103850486	bra-r.6 for 103872973	bra-r.6 for 103834515	ath-u.5 for AT2G38410	ath-u.5 for AT4G32760	ghi-r.1 for 107901553	ghi-r.1 for 107903521	ghi-r.1 for 107905229	cit-r.1 for 102607336	cit-r.1 for 102614457	cit-r.1 for 102619497	gma-u.5 for 732580	gma-u.5 for 100792343	gma-u.5 for 100788146	vvi-u.5 for 100249280	vvi-u.5 for 100260765	vvi-u.5 for 100267076	ppo-u.5 for 7462937	ppo-u.5 for 7487353	ppo-u.5 for 7469188	mtr-u.5 for 25482251	mtr-u.5 for 25489734	mtr-u.5 for 11432555	sly-u.5 for 101260958	sly-u.5 for 101245325	sly-u.5 for 101245875	sot-r.1 for 102582428	sot-r.1 for 102585872	sot-r.1 for 102587814	nta-r.1 for 107791855	nta-r.1 for 107761140	nta-r.1 for 107763152	osa-u.5 for 4350004	osa-u.5 for 4325877	osa-u.5 for 4338463	zma-u.5 for 100281176	zma-u.5 for 100382593	zma-u.5 for 100501156	tae-r.2 for 123060012	tae-r.2 for 123096312	tae-r.2 for 123079601	hvu-r.1 for 123445007	hvu-r.1 for 123444789	hvu-r.1 for 123443250	sbi-r.1 for 8056288	sbi-r.1 for 8078110	sbi-r.1 for 8066773	bdi-r.1 for 100820952	bdi-r.1 for 100821721	bdi-r.1 for 100821912

Ortholog

Ortholog ID: 420

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

TOM1-like protein 4

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 3

TOM1-like protein 4

Target of Myb protein 1

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 3

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 4

TOM1-like protein 9

TOM1-like protein 4

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 3

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 3

target of Myb protein 1

TOM1-like protein 2

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 3

TOM1-like protein 6

TOM1-like protein 9

VHS and GAT domain protein

protein transporter

uncharacterized LOC100281721

TOM1-like protein 6

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 7

TOM1-like protein 6

TOM1-like protein 9

target of Myb protein 1

uncharacterized LOC8062336

TOM1-like protein 2

TOM1-like protein 9

TOM1-like protein 6

TOM1-like protein 9

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	3
bna00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	3
bna00600	Sphingolipid metabolism	3
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath00020	Citrate cycle (TCA cycle)	3
ath01200	Carbon metabolism	3
ath00190	Oxidative phosphorylation	3
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04142	Lysosome	3
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma04144	Endocytosis	3
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma00510	N-Glycan biosynthesis	2
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma03250	Viral life cycle - HIV-1	2
gma03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04382	Cornified envelope formation	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	3
mtr04016	MAPK signaling pathway - plant	2
mtr04075	Plant hormone signal transduction	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00071	Fatty acid degradation	2
nta00410	beta-Alanine metabolism	2
nta00592	alpha-Linolenic acid metabolism	2
nta00640	Propanoate metabolism	2
nta01040	Biosynthesis of unsaturated fatty acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa00260	Glycine, serine and threonine metabolism	2
osa00670	One carbon pool by folate	2
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04070	Phosphatidylinositol signaling system	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma04016	MAPK signaling pathway - plant	2
zma03250	Viral life cycle - HIV-1	2
zma03272	Virion - Hepatitis viruses	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	8
tae04016	MAPK signaling pathway - plant	5
tae04626	Plant-pathogen interaction	5
tae04070	Phosphatidylinositol signaling system	3
tae00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi00440	Phosphonate and phosphinate metabolism	2
bdi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4

Expression

Expression pattern

Entrez Gene ID^*

106377224

106365959

106450950

103829377

103832153

838737

844033

107903521

107915015

107955979

102607336

102614457

102619497

100792343

100795713

100809022

100249280

100260765

100267076

7462937

7487353

7495708

25482251

25489734

11432555

101245325

101248528

101253775

102582428

102585872

102590302

107827293

107796556

107773767

4350004

4338463

4328993

100281176

100285221

100281721

123071245

123117069

123182360

123445007

123444789

123443250

8078110

8062336

8085373

100821912

100824684

100844962

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106354639 (bna-r.1 coexpression data)

Top 50 enrichment test to 106354639 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**