ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106354640	PH, RCC1 and FYVE domains-containing protein 1
bna-r.1	106447275	PH, RCC1 and FYVE domains-containing protein 1
bna-r.1	106386150	PH, RCC1 and FYVE domains-containing protein 1
bna-r.1	106355434	PH, RCC1 and FYVE domains-containing protein 1
bra-r.6	103830587	PH, RCC1 and FYVE domains-containing protein 1
bra-r.6	103831580	PH, RCC1 and FYVE domains-containing protein 1
bra-r.6	103832150	PH, RCC1 and FYVE domains-containing protein 1
ath-u.5	AT5G42140	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
ath-u.5	PRAF1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
ghi-r.1	107940983	PH, RCC1 and FYVE domains-containing protein 1
ghi-r.1	107914119	PH, RCC1 and FYVE domains-containing protein 1
ghi-r.1	107910441	PH, RCC1 and FYVE domains-containing protein 1
cit-r.1	102627137	PH, RCC1 and FYVE domains-containing protein 1-like
gma-u.5	100813700	PH, RCC1 and FYVE domains-containing protein 1
gma-u.5	100811999	PH, RCC1 and FYVE domains-containing protein 1
gma-u.5	100805364	PH, RCC1 and FYVE domains-containing protein 1
vvi-u.5	100246114	PH, RCC1 and FYVE domains-containing protein 1
ppo-u.5	7467827	PH, RCC1 and FYVE domains-containing protein 1
ppo-u.5	7469211	PH, RCC1 and FYVE domains-containing protein 1
mtr-u.5	25496065	PH, RCC1 and FYVE domains-containing protein 1
mtr-u.5	11420473	PH, RCC1 and FYVE domains-containing protein 1
sly-u.5	101260719	PH, RCC1 and FYVE domains-containing protein 1
sot-r.1	102604257	uncharacterized LOC102604257
nta-r.1	107760172	PH, RCC1 and FYVE domains-containing protein 1
nta-r.1	107767647	PH, RCC1 and FYVE domains-containing protein 1
osa-u.5	4337567	PH, RCC1 and FYVE domains-containing protein 1
osa-u.5	4324462	PH, RCC1 and FYVE domains-containing protein 1
osa-u.5	4337469	PH, RCC1 and FYVE domains-containing protein 1
zma-u.5	103636262	PH, RCC1 and FYVE domains-containing protein 1
zma-u.5	100304223	uncharacterized LOC100304223
zma-u.5	100381412	uncharacterized LOC100381412
tae-r.2	123103647	PH, RCC1 and FYVE domains-containing protein 1
tae-r.2	123047517	PH, RCC1 and FYVE domains-containing protein 1
tae-r.2	123055312	PH, RCC1 and FYVE domains-containing protein 1
hvu-r.1	123428495	PH, RCC1 and FYVE domains-containing protein 1-like
hvu-r.1	123430202	PH, RCC1 and FYVE domains-containing protein 1-like
hvu-r.1	123445625	PH, RCC1 and FYVE domains-containing protein 1-like
sbi-r.1	8068646	uncharacterized LOC8068646
sbi-r.1	8076503	uncharacterized LOC8076503
sbi-r.1	8077416	E3 ubiquitin-protein ligase HERC2
bdi-r.1	100835494	PH, RCC1 and FYVE domains-containing protein 1
bdi-r.1	100832036	PH, RCC1 and FYVE domains-containing protein 1
bdi-r.1	100833487	PH, RCC1 and FYVE domains-containing protein 1

Top 50 coexpressed genes to 106354640 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106354640 (bna-r.1 coexpression data)

CoexMap"106354640"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0046872 [list] [network] metal ion binding

(6718 genes)

IEA

Protein

XP_013650084.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_013650084.2)

Subcellular
localization
TargetP

other 8

(predict for XP_013650084.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106354640	bna-r.1 for 106447275	bna-r.1 for 106386150	bna-r.1 for 106355434	bra-r.6 for 103830587	bra-r.6 for 103831580	bra-r.6 for 103832150	ath-u.5 for AT5G42140	ath-u.5 for PRAF1	ghi-r.1 for 107940983	ghi-r.1 for 107914119	ghi-r.1 for 107910441	cit-r.1 for 102627137	gma-u.5 for 100813700	gma-u.5 for 100811999	gma-u.5 for 100805364	vvi-u.5 for 100246114	ppo-u.5 for 7467827	ppo-u.5 for 7469211	mtr-u.5 for 25496065	mtr-u.5 for 11420473	sly-u.5 for 101260719	sot-r.1 for 102604257	nta-r.1 for 107760172	nta-r.1 for 107767647	osa-u.5 for 4337567	osa-u.5 for 4324462	osa-u.5 for 4337469	zma-u.5 for 103636262	zma-u.5 for 100304223	zma-u.5 for 100381412	tae-r.2 for 123103647	tae-r.2 for 123047517	tae-r.2 for 123055312	hvu-r.1 for 123428495	hvu-r.1 for 123430202	hvu-r.1 for 123445625	sbi-r.1 for 8068646	sbi-r.1 for 8076503	sbi-r.1 for 8077416	bdi-r.1 for 100835494	bdi-r.1 for 100832036	bdi-r.1 for 100833487

Ortholog

Ortholog ID: 3148

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PRAF1

Function^*