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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106358514   diaminopimelate decarboxylase 2, chloroplastic 
 bna-r.1   106430932   diaminopimelate decarboxylase 2, chloroplastic 
 bna-r.1   106424616   diaminopimelate decarboxylase 2, chloroplastic-like 
 bna-r.1   106420194   diaminopimelate decarboxylase 2, chloroplastic 
 bra-r.6   103855942   diaminopimelate decarboxylase 2, chloroplastic 
 bra-r.6   103846688   diaminopimelate decarboxylase 2, chloroplastic 
 ath-u.5   AT3G14390   Pyridoxal-dependent decarboxylase family protein 
 ath-u.5   AT5G11880   Pyridoxal-dependent decarboxylase family protein 
 ghi-r.1   107920343   diaminopimelate decarboxylase 2, chloroplastic 
 ghi-r.1   107942432   diaminopimelate decarboxylase 2, chloroplastic 
 ghi-r.1   107945027   diaminopimelate decarboxylase 2, chloroplastic 
 cit-r.1   102612099   diaminopimelate decarboxylase 1, chloroplastic-like 
 gma-u.5   100786832   diaminopimelate decarboxylase 2, chloroplastic-like 
 gma-u.5   100791677   diaminopimelate decarboxylase 1, chloroplastic 
 gma-u.5   100809499   diaminopimelate decarboxylase 2, chloroplastic-like 
 vvi-u.5   100265358   diaminopimelate decarboxylase 2, chloroplastic 
 vvi-u.5   100247076   diaminopimelate decarboxylase 2, chloroplastic 
 ppo-u.5   7470003   diaminopimelate decarboxylase 2, chloroplastic 
 ppo-u.5   7464016   diaminopimelate decarboxylase 2, chloroplastic 
 mtr-u.5   11429414   diaminopimelate decarboxylase 1, chloroplastic 
 sly-u.5   101249215   diaminopimelate decarboxylase 1, chloroplastic 
 sot-r.1   102593561   diaminopimelate decarboxylase 1, chloroplastic-like 
 nta-r.1   107794250   diaminopimelate decarboxylase 1, chloroplastic 
 nta-r.1   107792812   diaminopimelate decarboxylase 1, chloroplastic 
 osa-u.5   4329234   probable diaminopimelate decarboxylase, chloroplastic 
 zma-u.5   100217223   Diaminopimelate decarboxylase 2 chloroplastic 
 zma-u.5   100273126   diaminopimelate decarboxylase 
 tae-r.2   123136321   probable diaminopimelate decarboxylase, chloroplastic 
 tae-r.2   123132276   probable diaminopimelate decarboxylase, chloroplastic 
 tae-r.2   123143836   probable diaminopimelate decarboxylase, chloroplastic 
 hvu-r.1   123401308   probable diaminopimelate decarboxylase, chloroplastic 
 sbi-r.1   8066978   probable diaminopimelate decarboxylase, chloroplastic 
 sbi-r.1   110435303   uncharacterized LOC110435303 
 bdi-r.1   100834023   probable diaminopimelate decarboxylase, chloroplastic 
 cre-r.1   CHLRE_01g050100v5   uncharacterized protein 

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Top 50 coexpressed genes to 106358514 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106358514 (bna-r.1 coexpression data)

CoexMap"106358514"


bnaLOC106358514 | Entrez gene ID : 106358514    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 1 3 2 2 1 1 1 2 1 2 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00300 [list] [network] Lysine biosynthesis (41 genes)
bna00470 [list] [network] D-Amino acid metabolism (16 genes)
bna01230 [list] [network] Biosynthesis of amino acids (773 genes)
GO BP
GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate  (29 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0008836 [list] [network] diaminopimelate decarboxylase activity  (4 genes)  IEA  
Protein XP_013653782.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 2  (predict for XP_013653782.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013653782.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106358514
bna-r.1
for
106430932
bna-r.1
for
106424616
bna-r.1
for
106420194
bra-r.6
for
103855942
bra-r.6
for
103846688
ath-u.5
for
AT3G14390
ath-u.5
for
AT5G11880
ghi-r.1
for
107920343
ghi-r.1
for
107942432
ghi-r.1
for
107945027
cit-r.1
for
102612099
gma-u.5
for
100786832
gma-u.5
for
100791677
gma-u.5
for
100809499
vvi-u.5
for
100265358
vvi-u.5
for
100247076
ppo-u.5
for
7470003
ppo-u.5
for
7464016
mtr-u.5
for
11429414
sly-u.5
for
101249215
sot-r.1
for
102593561
nta-r.1
for
107794250
nta-r.1
for
107792812
osa-u.5
for
4329234
zma-u.5
for
100217223
zma-u.5
for
100273126
tae-r.2
for
123136321
tae-r.2
for
123132276
tae-r.2
for
123143836
hvu-r.1
for
123401308
sbi-r.1
for
8066978
sbi-r.1
for
110435303
bdi-r.1
for
100834023
cre-r.1
for
CHLRE_01g050100v5


Ortholog ID: 5992
Species bna bna bna bra bra ath ath ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC106430932 LOC106424616 LOC106420194 LOC103855942 LOC103846688 AT3G14390 AT5G11880 LOC107920343 LOC107942432 LOC107945027 LOC102612099 LOC100786832 LOC100791677 LOC100809499 LOC100265358 LOC100247076 LOC7470003 LOC7464016 LOC11429414 LOC101249215 LOC102593561 LOC107794250 LOC107792812 LOC4329234 LOC100217223 LOC100273126 LOC123136321 LOC123132276 LOC123143836 LOC123401308 LOC8066978 LOC110435303 LOC100834023 CHLRE_01g050100v5
Function* diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic-like diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic Pyridoxal-dependent decarboxylase family protein Pyridoxal-dependent decarboxylase family protein diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 1, chloroplastic-like diaminopimelate decarboxylase 2, chloroplastic-like diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 2, chloroplastic-like diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 2, chloroplastic diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 1, chloroplastic-like diaminopimelate decarboxylase 1, chloroplastic diaminopimelate decarboxylase 1, chloroplastic probable diaminopimelate decarboxylase, chloroplastic Diaminopimelate decarboxylase 2 chloroplastic diaminopimelate decarboxylase probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic probable diaminopimelate decarboxylase, chloroplastic uncharacterized LOC110435303 probable diaminopimelate decarboxylase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 4
bna00470 D-Amino acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00240 Pyrimidine metabolism 3
bna00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00300 Lysine biosynthesis 4
bna00470 D-Amino acid metabolism 4
bna01230 Biosynthesis of amino acids 4
bna00240 Pyrimidine metabolism 3
bna00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 4
bna01240 Biosynthesis of cofactors 4
bna00300 Lysine biosynthesis 4
bna00470 D-Amino acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00300 Lysine biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00970 Aminoacyl-tRNA biosynthesis 2
bra00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00230 Purine metabolism 3
bra00970 Aminoacyl-tRNA biosynthesis 3
bra00300 Lysine biosynthesis 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath01210 2-Oxocarboxylic acid metabolism 7
ath00300 Lysine biosynthesis 5
ath00290 Valine, leucine and isoleucine biosynthesis 5
ath00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 15
ath01210 2-Oxocarboxylic acid metabolism 8
ath00220 Arginine biosynthesis 5
ath00300 Lysine biosynthesis 5
ath01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00300 Lysine biosynthesis 3
ghi00470 D-Amino acid metabolism 3
ghi00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00300 Lysine biosynthesis 3
ghi00470 D-Amino acid metabolism 3
ghi00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 11
ghi00300 Lysine biosynthesis 3
ghi00470 D-Amino acid metabolism 3
ghi00260 Glycine, serine and threonine metabolism 3
ghi00460 Cyanoamino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00300 Lysine biosynthesis 3
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00300 Lysine biosynthesis 2
gma00470 D-Amino acid metabolism 2
gma01230 Biosynthesis of amino acids 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 7
gma00220 Arginine biosynthesis 4
gma03010 Ribosome 2
gma00300 Lysine biosynthesis 2
gma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma01230 Biosynthesis of amino acids 3
gma00300 Lysine biosynthesis 2
gma00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi01230 Biosynthesis of amino acids 5
vvi00290 Valine, leucine and isoleucine biosynthesis 2
vvi01210 2-Oxocarboxylic acid metabolism 2
vvi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo01230 Biosynthesis of amino acids 3
ppo00300 Lysine biosynthesis 2
ppo00470 D-Amino acid metabolism 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 6
ppo00300 Lysine biosynthesis 3
ppo01230 Biosynthesis of amino acids 3
ppo00470 D-Amino acid metabolism 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 12
sly00260 Glycine, serine and threonine metabolism 3
sly01210 2-Oxocarboxylic acid metabolism 3
sly00300 Lysine biosynthesis 3
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 6
sot00300 Lysine biosynthesis 4
sot01240 Biosynthesis of cofactors 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 10
nta00300 Lysine biosynthesis 5
nta00470 D-Amino acid metabolism 5
nta00010 Glycolysis / Gluconeogenesis 3
nta00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 11
nta01230 Biosynthesis of amino acids 8
nta00300 Lysine biosynthesis 4
nta00470 D-Amino acid metabolism 4
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 10
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 3
osa01200 Carbon metabolism 3
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 4
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 3
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00300 Lysine biosynthesis 9
tae01230 Biosynthesis of amino acids 9
tae03015 mRNA surveillance pathway 4
tae00261 Monobactam biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00300 Lysine biosynthesis 8
tae00470 D-Amino acid metabolism 3
tae03015 mRNA surveillance pathway 2
tae00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 11
tae00300 Lysine biosynthesis 9
tae03015 mRNA surveillance pathway 4
tae00261 Monobactam biosynthesis 3
tae00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu00450 Selenocompound metabolism 2
hvu00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi01240 Biosynthesis of cofactors 3
sbi03010 Ribosome 2
sbi00300 Lysine biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 5
bdi00290 Valine, leucine and isoleucine biosynthesis 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi00220 Arginine biosynthesis 2
bdi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 9
cre01230 Biosynthesis of amino acids 7
cre00300 Lysine biosynthesis 2
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00220 Arginine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106430932 106424616 106420194 103855942 103846688 820660 831061 107920343 107942432 107945027 102612099 100786832 100791677 100809499 100265358 100247076 7470003 7464016 11429414 101249215 102593561 107794250 107792812 4329234 100217223 100273126 123136321 123132276 123143836 123401308 8066978 110435303 100834023 5715731
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