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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106362238   zinc finger CCCH domain-containing protein 4 
 bna-r.1   106446975   zinc finger CCCH domain-containing protein 25 
 bna-r.1   111208744   zinc finger CCCH domain-containing protein 4-like 
 bna-r.1   106389555   zinc finger CCCH domain-containing protein 25-like 
 bra-r.6   103864977   zinc finger CCCH domain-containing protein 25 
 bra-r.6   103836448   zinc finger CCCH domain-containing protein 4 
 ath-u.5   MAC5B   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ath-u.5   MAC5A   CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 
 ghi-r.1   107922165   zinc finger CCCH domain-containing protein 40 
 ghi-r.1   107932572   zinc finger CCCH domain-containing protein 40 
 cit-r.1   102630896   zinc finger CCCH domain-containing protein 40 
 gma-u.5   100810440   zinc finger CCCH domain-containing protein 25 
 gma-u.5   100789382   zinc finger CCCH domain-containing protein 40 
 gma-u.5   100779917   zinc finger CCCH domain-containing protein 40 
 vvi-u.5   100241603   zinc finger CCCH domain-containing protein 49 
 ppo-u.5   7468587   zinc finger CCCH domain-containing protein 49 
 mtr-u.5   11439454   zinc finger CCCH domain-containing protein 49 
 sly-u.5   101262575   Zinc finger transcription factor 61 
 sly-u.5   101253177   zinc finger CCCH domain-containing protein 49-like 
 sot-r.1   102588254   zinc finger CCCH domain-containing protein 49-like 
 sot-r.1   102577515   RRM-containing RNA-binding protein-like protein 
 nta-r.1   107810796   zinc finger CCCH domain-containing protein 49 
 nta-r.1   107807944   zinc finger CCCH domain-containing protein 40 
 nta-r.1   107759280   zinc finger CCCH domain-containing protein 49-like 
 osa-u.5   4340263   zinc finger CCCH domain-containing protein 40-like 
 osa-u.5   4342926   zinc finger CCCH domain-containing protein 49-like 
 zma-u.5   100285059   uncharacterized LOC100285059 
 tae-r.2   123151931   zinc finger CCCH domain-containing protein 40 
 tae-r.2   123162176   zinc finger CCCH domain-containing protein 40 
 tae-r.2   123164558   zinc finger CCCH domain-containing protein 40 
 hvu-r.1   123407170   zinc finger CCCH domain-containing protein 40 
 sbi-r.1   8073843   zinc finger CCCH domain-containing protein 40 
 sbi-r.1   8072573   zinc finger CCCH domain-containing protein 40 
 bdi-r.1   100843243   zinc finger CCCH domain-containing protein 40 
 cre-r.1   CHLRE_02g075650v5   uncharacterized protein 

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Top 50 coexpressed genes to 106362238 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106362238 (bna-r.1 coexpression data)

CoexMap"106362238"


bnaLOC106362238 | Entrez gene ID : 106362238    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 2 1 3 1 1 1 2 2 3 2 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO CC
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (26 genes)  IEA  
GO:0071006 [list] [network] U2-type catalytic step 1 spliceosome  (27 genes)  IEA  
GO:0000974 [list] [network] Prp19 complex  (51 genes)  IEA  
GO MF
GO:0017070 [list] [network] U6 snRNA binding  (28 genes)  IEA  
GO:0036002 [list] [network] pre-mRNA binding  (56 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (6718 genes)  IEA  
Protein XP_013657546.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  mito 2  (predict for XP_013657546.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013657546.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106362238
bna-r.1
for
106446975
bna-r.1
for
111208744
bna-r.1
for
106389555
bra-r.6
for
103864977
bra-r.6
for
103836448
ath-u.5
for
MAC5B
ath-u.5
for
MAC5A
ghi-r.1
for
107922165
ghi-r.1
for
107932572
cit-r.1
for
102630896
gma-u.5
for
100810440
gma-u.5
for
100789382
gma-u.5
for
100779917
vvi-u.5
for
100241603
ppo-u.5
for
7468587
mtr-u.5
for
11439454
sly-u.5
for
101262575
sly-u.5
for
101253177
sot-r.1
for
102588254
sot-r.1
for
102577515
nta-r.1
for
107810796
nta-r.1
for
107807944
nta-r.1
for
107759280
osa-u.5
for
4340263
osa-u.5
for
4342926
zma-u.5
for
100285059
tae-r.2
for
123151931
tae-r.2
for
123162176
tae-r.2
for
123164558
hvu-r.1
for
123407170
sbi-r.1
for
8073843
sbi-r.1
for
8072573
bdi-r.1
for
100843243
cre-r.1
for
CHLRE_02g075650v5


Ortholog ID: 5266
Species bna bna bna bra bra ath ath ghi ghi cit gma gma gma vvi ppo mtr sly sly sot sot nta nta nta osa osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC106362238 LOC111208744 LOC106389555 LOC103864977 LOC103836448 MAC5B MAC5A LOC107922165 LOC107932572 LOC102630896 LOC100810440 LOC100789382 LOC100779917 LOC100241603 LOC7468587 LOC11439454 LOC101262575 LOC101253177 LOC102588254 LOC102577515 LOC107807944 LOC107759280 LOC107802168 LOC4340263 LOC4342926 LOC100285059 LOC123151931 LOC123162176 LOC123164558 LOC123407170 LOC8073843 LOC8072573 LOC100843243 CHLRE_02g075650v5
Function* zinc finger CCCH domain-containing protein 4 zinc finger CCCH domain-containing protein 4-like zinc finger CCCH domain-containing protein 25-like zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 4 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 49 zinc finger CCCH domain-containing protein 49 zinc finger CCCH domain-containing protein 49 Zinc finger transcription factor 61 zinc finger CCCH domain-containing protein 49-like zinc finger CCCH domain-containing protein 49-like RRM-containing RNA-binding protein-like protein zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 49-like zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40-like zinc finger CCCH domain-containing protein 49-like uncharacterized LOC100285059 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 zinc finger CCCH domain-containing protein 40 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00020 Citrate cycle (TCA cycle) 5
bna01200 Carbon metabolism 5
bna01210 2-Oxocarboxylic acid metabolism 5
bna01230 Biosynthesis of amino acids 5
bna04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma00260 Glycine, serine and threonine metabolism 2
gma00460 Cyanoamino acid metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi03250 Viral life cycle - HIV-1 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
osa04141 Protein processing in endoplasmic reticulum 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106362238 111208744 106389555 103864977 103836448 817507 837248 107922165 107932572 102630896 100810440 100789382 100779917 100241603 7468587 11439454 101262575 101253177 102588254 102577515 107807944 107759280 107802168 4340263 4342926 100285059 123151931 123162176 123164558 123407170 8073843 8072573 100843243 5727200
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