ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106365769	transcription termination factor MTERF4, chloroplastic-like
ath-u.5	AT5G07900	Mitochondrial transcription termination factor family protein
ath-u.5	AT5G64950	Mitochondrial transcription termination factor family protein
ath-u.5	AT1G21150	Mitochondrial transcription termination factor family protein
gma-u.5	100806920	transcription termination factor MTERF15, mitochondrial
gma-u.5	100813396	transcription termination factor MTERF15, mitochondrial
gma-u.5	106799612	uncharacterized LOC106799612
vvi-u.5	100251002	uncharacterized LOC100251002
vvi-u.5	100245862	transcription termination factor MTERF5, chloroplastic
ppo-u.5	7462813	transcription termination factor MTERF4, chloroplastic
ppo-u.5	7455788	transcription termination factor MTERF9, chloroplastic
ppo-u.5	7476812	uncharacterized LOC7476812
mtr-u.5	25501781	transcription termination factor MTERF5, chloroplastic
mtr-u.5	11446118	uncharacterized LOC11446118
mtr-u.5	25490579	uncharacterized LOC25490579
sly-u.5	101253358	transcription termination factor MTERF5, chloroplastic
sly-u.5	101267803	uncharacterized LOC101267803
sly-u.5	101266934	uncharacterized LOC101266934
osa-u.5	9267605	transcription termination factor MTERF8, chloroplastic
osa-u.5	9266609	transcription termination factor MTERF4, chloroplastic
osa-u.5	4340542	transcription termination factor MTERF9, chloroplastic
zma-u.5	100285792	uncharacterized LOC100285792
zma-u.5	100275501	uncharacterized LOC100275501
zma-u.5	100193389	uncharacterized LOC100193389

Annotation

functional annotation

KEGG

GO BP

GO:0009658 [list] [network] chloroplast organization	(193 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(5322 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(1821 genes)

IEA

GO MF

GO:0003690 [list] [network] double-stranded DNA binding

(1590 genes)

IEA

Protein

XP_013660709.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, chlo_mito 5, mito 3, cyto_mito 1

(predict for XP_013660709.1)

Subcellular
localization
TargetP

mito 9

(predict for XP_013660709.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106365769	ath-u.5 for AT5G07900	ath-u.5 for AT5G64950	ath-u.5 for AT1G21150	gma-u.5 for 100806920	gma-u.5 for 100813396	gma-u.5 for 106799612	vvi-u.5 for 100251002	vvi-u.5 for 100245862	ppo-u.5 for 7462813	ppo-u.5 for 7455788	ppo-u.5 for 7476812	mtr-u.5 for 25501781	mtr-u.5 for 11446118	mtr-u.5 for 25490579	sly-u.5 for 101253358	sly-u.5 for 101267803	sly-u.5 for 101266934	osa-u.5 for 9267605	osa-u.5 for 9266609	osa-u.5 for 4340542	zma-u.5 for 100285792	zma-u.5 for 100275501	zma-u.5 for 100193389

Ortholog

Ortholog ID: 37

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

transcription termination factor MTERF8, chloroplastic

transcription termination factor MTERF4, chloroplastic-like

transcription termination factor MTERF8, chloroplastic

uncharacterized LOC103862768

Mitochondrial transcription termination factor family protein

uncharacterized LOC107931417

transcription termination factor MTERF6, chloroplastic/mitochondrial

transcription termination factor MTERF15, mitochondrial-like

uncharacterized LOC102622219

transcription termination factor MTERF15, mitochondrial

uncharacterized LOC106796317

transcription termination factor MTERF15, mitochondrial

transcription termination factor MTERF9, chloroplastic-like

uncharacterized LOC18111233

transcription termination factor MTERF9, chloroplastic

uncharacterized LOC11422280

uncharacterized LOC25494089

transcription termination factor MTERF9, chloroplastic

uncharacterized LOC101267803

uncharacterized LOC102588163

uncharacterized LOC102589966

transcription termination factor MTERF15, mitochondrial-like

transcription termination factor MTERF8, chloroplastic-like

transcription termination factor MTERF2, chloroplastic

uncharacterized LOC100284682

uncharacterized LOC100193811

uncharacterized LOC123145472

uncharacterized LOC123080704

transcription termination factor MTERF8, chloroplastic-like

uncharacterized LOC123411721

transcription termination factor MTEF1, chloroplastic

uncharacterized LOC8062993

uncharacterized LOC100840205

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	2
bna00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	10
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00190	Oxidative phosphorylation	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot00280	Valine, leucine and isoleucine degradation	2
sot00270	Cysteine and methionine metabolism	2
sot00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta00220	Arginine biosynthesis	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00510	N-Glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

106434119

106365769

103858260

103862768

836619

838711

107931417

107916058

127900674

102622219

100806920

106796317

100258309

100241175

18111233

18094344

11422280

25494089

101258025

101267803

102588163

102589966

107777294

107759636

4343048

100284682

100193811

123145472

123080704

123401732

123411721

8057353

8062993

100840205

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106365769 (bna-r.1 coexpression data)

Top 50 enrichment test to 106365769 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	3	3	2	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106365769 (bna-r.1 coexpression data)

Top 50 enrichment test to 106365769 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**