ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT5G64950	Mitochondrial transcription termination factor family protein
ath-r.7	AT5G64950	Mitochondrial transcription termination factor family protein
ath-m.9	AT5G64950	Mitochondrial transcription termination factor family protein
ath-e.2	AT5G64950	Mitochondrial transcription termination factor family protein
ath-m.4.bio	AT5G64950	Mitochondrial transcription termination factor family protein
ath-m.4.hor	AT5G64950	Mitochondrial transcription termination factor family protein
ath-m.4.lig	AT5G64950	Mitochondrial transcription termination factor family protein
ath-m.4.str	AT5G64950	Mitochondrial transcription termination factor family protein
ath-m.4.tis	AT5G64950	Mitochondrial transcription termination factor family protein
ath-u.5	AT5G07900	Mitochondrial transcription termination factor family protein
ath-u.5	AT1G21150	Mitochondrial transcription termination factor family protein
gma-u.5	100806920	transcription termination factor MTERF15, mitochondrial
gma-u.5	100813396	transcription termination factor MTERF15, mitochondrial
gma-u.5	106799612	uncharacterized LOC106799612
vvi-u.5	104879767	transcription termination factor MTERF6, chloroplastic/mitochondrial
vvi-u.5	100256384	transcription termination factor MTERF5, chloroplastic
vvi-u.5	100254077	uncharacterized LOC100254077
ppo-u.5	7455788	transcription termination factor MTERF9, chloroplastic
ppo-u.5	7476812	uncharacterized LOC7476812
mtr-u.5	25488108	uncharacterized LOC25488108
mtr-u.5	25494089	uncharacterized LOC25494089
mtr-u.5	25491192	uncharacterized LOC25491192
sly-u.5	101253358	transcription termination factor MTERF5, chloroplastic
sly-u.5	101249514	transcription termination factor MTERF2, chloroplastic-like
sly-u.5	101268097	transcription termination factor MTERF6, chloroplastic/mitochondrial
osa-u.5	9267605	transcription termination factor MTERF8, chloroplastic
osa-u.5	9266609	transcription termination factor MTERF4, chloroplastic
zma-u.5	100217134	uncharacterized LOC100217134
zma-u.5	100194019	uncharacterized LOC100194019
zma-u.5	100193811	uncharacterized LOC100193811

Annotation

functional annotation

KEGG

GO BP

GO:0000963 [list] [network] mitochondrial RNA processing	(26 genes)	IMP
GO:0000959 [list] [network] mitochondrial RNA metabolic process	(54 genes)	IMP

GO CC

GO:0005739 [list] [network] mitochondrion

(4244 genes)

IDA ISM

GO MF

GO:0003690 [list] [network] double-stranded DNA binding

(800 genes)

IEA

Protein

NP_201300.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, mito 3, nucl 1, cyto 1, cyto_nucl 1, golg_plas 1

(predict for NP_201300.1)

Subcellular
localization
TargetP

mito 8

(predict for NP_201300.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT5G64950	ath-r.7 for AT5G64950	ath-m.9 for AT5G64950	ath-e.2 for AT5G64950	ath-m.4.bio for AT5G64950	ath-m.4.hor for AT5G64950	ath-m.4.lig for AT5G64950	ath-m.4.str for AT5G64950	ath-m.4.tis for AT5G64950	ath-u.5 for AT5G07900	ath-u.5 for AT1G21150	gma-u.5 for 100806920	gma-u.5 for 100813396	gma-u.5 for 106799612	vvi-u.5 for 104879767	vvi-u.5 for 100256384	vvi-u.5 for 100254077	ppo-u.5 for 7455788	ppo-u.5 for 7476812	mtr-u.5 for 25488108	mtr-u.5 for 25494089	mtr-u.5 for 25491192	sly-u.5 for 101253358	sly-u.5 for 101249514	sly-u.5 for 101268097	osa-u.5 for 9267605	osa-u.5 for 9266609	zma-u.5 for 100217134	zma-u.5 for 100194019	zma-u.5 for 100193811

Ortholog

Ortholog ID: 37

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Mitochondrial transcription termination factor family protein

transcription termination factor MTERF8, chloroplastic

uncharacterized LOC103862768

transcription termination factor MTERF8, chloroplastic

transcription termination factor MTERF4, chloroplastic-like

uncharacterized LOC107931417

transcription termination factor MTERF6, chloroplastic/mitochondrial

transcription termination factor MTERF15, mitochondrial-like

uncharacterized LOC102622219

transcription termination factor MTERF15, mitochondrial

uncharacterized LOC106796317

transcription termination factor MTERF15, mitochondrial

transcription termination factor MTERF9, chloroplastic-like

uncharacterized LOC18111233

transcription termination factor MTERF9, chloroplastic

uncharacterized LOC11422280

uncharacterized LOC25494089

transcription termination factor MTERF9, chloroplastic

uncharacterized LOC101267803

uncharacterized LOC102588163

uncharacterized LOC102589966

transcription termination factor MTERF15, mitochondrial-like

transcription termination factor MTERF8, chloroplastic-like

transcription termination factor MTERF2, chloroplastic

uncharacterized LOC100284682

uncharacterized LOC100193811

uncharacterized LOC123145472

uncharacterized LOC123080704

transcription termination factor MTERF8, chloroplastic-like

uncharacterized LOC123411721

transcription termination factor MTEF1, chloroplastic

uncharacterized LOC8062993

uncharacterized LOC100840205

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	2
bna00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	10
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00190	Oxidative phosphorylation	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot00280	Valine, leucine and isoleucine degradation	2
sot00270	Cysteine and methionine metabolism	2
sot00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta00220	Arginine biosynthesis	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00510	N-Glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

836619

838711

103858260

103862768

106434119

106365769

107931417

107916058

127900674

102622219

100806920

106796317

100258309

100241175

18111233

18094344

11422280

25494089

101258025

101267803

102588163

102589966

107777294

107759636

4343048

100284682

100193811

123145472

123080704

123401732

123411721

8057353

8062993

100840205

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT5G64950 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G64950 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	11	3	3	2	3	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G64950 (ath-u.5 coexpression data)

Top 50 enrichment test to AT5G64950 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**