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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106366990   small nuclear ribonucleoprotein-associated protein B' 
 ath-u.5   smB   small nuclear ribonucleoprotein associated protein B 
 ath-u.5   AT5G44500   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100786807   small nuclear ribonucleoprotein-associated protein B 
 gma-u.5   100780500   small nuclear ribonucleoprotein-associated protein B 
 vvi-u.5   100257709   small nuclear ribonucleoprotein-associated protein B'-like 
 ppo-u.5   18095770   uncharacterized LOC18095770 
 mtr-u.5   11431976   small nuclear ribonucleoprotein-associated protein B 
 mtr-u.5   25501710   small nuclear ribonucleoprotein-associated protein B' 
 sly-u.5   101262959   uncharacterized LOC101262959 
 osa-u.5   9270807   uncharacterized LOC9270807 
 zma-u.5   100282140   small nuclear ribonucleoprotein-associated protein B 
 zma-u.5   100272538   small nuclear ribonucleoprotein-associated protein B 

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Top 50 coexpressed genes to 106366990 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106366990 (bna-r.1 coexpression data)

CoexMap"106366990"


bnaLOC106366990 | Entrez gene ID : 106366990    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 2 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005687 [list] [network] U4 snRNP  (34 genes)  IEA  
GO:0005682 [list] [network] U5 snRNP  (56 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (106 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013662123.1 [sequence] [blastp]
XP_013662125.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for XP_013662123.1)
chlo 4,  nucl 4,  cyto 1,  mito 1,  plas 1,  extr 1,  mito_plas 1,  cyto_plas 1  (predict for XP_013662125.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_013662123.1)
mito 3  (predict for XP_013662125.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106366990

.
ath-u.5
for
smB

.
ath-u.5
for
AT5G44500

.
gma-u.5
for
100786807

.
gma-u.5
for
100780500

.
vvi-u.5
for
100257709

.
ppo-u.5
for
18095770

.
mtr-u.5
for
11431976

.
mtr-u.5
for
25501710

.
sly-u.5
for
101262959

.
osa-u.5
for
9270807

.
zma-u.5
for
100282140

.
zma-u.5
for
100272538

.


Ortholog ID: 5799
Species ath ath gma gma sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol smB AT5G44500 LOC100786807 LOC100780500 LOC101262959 LOC9270807 LOC100282140 LOC100272538 LOC103834168 LOC100257709 LOC18095770 LOC25501710 LOC11431976 LOC123052809 LOC123045027 LOC123426167 LOC107930376 LOC107925138 LOC106366990 LOC125590046 CHLRE_14g611150v5 LOC8081170 LOC102585140 LOC102591714 LOC102630807 LOC106865937 LOC107825164 LOC107793822
Function* small nuclear ribonucleoprotein associated protein B Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein-associated protein B small nuclear ribonucleoprotein-associated protein B uncharacterized LOC101262959 uncharacterized LOC9270807 small nuclear ribonucleoprotein-associated protein B small nuclear ribonucleoprotein-associated protein B small nuclear ribonucleoprotein-associated protein B' small nuclear ribonucleoprotein-associated protein B'-like uncharacterized LOC18095770 small nuclear ribonucleoprotein-associated protein B' small nuclear ribonucleoprotein-associated protein B small nuclear ribonucleoprotein-associated protein B' small nuclear ribonucleoprotein-associated protein B' small nuclear ribonucleoprotein-associated protein B'-like small nuclear ribonucleoprotein-associated proteins B and B' small nuclear ribonucleoprotein-associated protein B small nuclear ribonucleoprotein-associated protein B' small nuclear ribonucleoprotein-associated protein B'-like uncharacterized protein small nuclear ribonucleoprotein-associated protein N small nuclear ribonucleoprotein-associated protein B'-like small nuclear ribonucleoprotein-associated proteins B and B'-like uncharacterized LOC102630807 small nuclear ribonucleoprotein-associated protein B' uncharacterized LOC107825164 uncharacterized LOC107793822
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03013 Nucleocytoplasmic transport 5
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03010 Ribosome 5
ath03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 8
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi00510 N-Glycan biosynthesis 2
vvi00513 Various types of N-glycan biosynthesis 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03040 Spliceosome 2
ppo03015 mRNA surveillance pathway 2
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
mtr03040 Spliceosome 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 8
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae03040 Spliceosome 3
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae03040 Spliceosome 3
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03015 mRNA surveillance pathway 2
ghi03022 Basal transcription factors 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
ghi03022 Basal transcription factors 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
bna03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot03013 Nucleocytoplasmic transport 5
sot03040 Spliceosome 2
sot03060 Protein export 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot04141 Protein processing in endoplasmic reticulum 3
sot03013 Nucleocytoplasmic transport 2
sot03060 Protein export 2
sot04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi03060 Protein export 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827792 834477 100786807 100780500 101262959 9270807 100282140 100272538 103834168 100257709 18095770 25501710 11431976 123052809 123045027 123426167 107930376 107925138 106366990 125590046 66056167 8081170 102585140 102591714 102630807 106865937 107825164 107793822
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