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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106372609   mediator of RNA polymerase II transcription subunit 4 
 ath-u.5   AT5G02850   hydroxyproline-rich glycoprotein family protein 
 gma-u.5   100812941   mediator of RNA polymerase II transcription subunit 4 
 gma-u.5   100812071   mediator of RNA polymerase II transcription subunit 4 
 gma-u.5   100796958   mediator of RNA polymerase II transcription subunit 4 
 vvi-u.5   100249946   mediator of RNA polymerase II transcription subunit 4 
 ppo-u.5   7467601   mediator of RNA polymerase II transcription subunit 4 
 mtr-u.5   11438689   mediator of RNA polymerase II transcription subunit 4 
 mtr-u.5   11426971   mediator of RNA polymerase II transcription subunit 4 
 sly-u.5   101246818   mediator of RNA polymerase II transcription subunit 4 
 sly-u.5   101244543   mediator of RNA polymerase II transcription subunit 4 
 osa-u.5   4347726   mediator of RNA polymerase II transcription subunit 4 
 zma-u.5   100277397   Mediator of RNA polymerase II transcription subunit 4 

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Top 50 coexpressed genes to 106372609 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106372609 (bna-r.1 coexpression data)

CoexMap"106372609"


bnaLOC106372609 | Entrez gene ID : 106372609    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 3 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0070847 [list] [network] core mediator complex  (19 genes)  IEA  
GO:0016592 [list] [network] mediator complex  (98 genes)  IEA  
GO MF
GO:0003712 [list] [network] transcription coregulator activity  (379 genes)  IEA  
Protein XP_013668306.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 2  (predict for XP_013668306.2)
Subcellular
localization
TargetP
chlo 6  (predict for XP_013668306.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106372609
ath-u.5
for
AT5G02850
gma-u.5
for
100812941
gma-u.5
for
100812071
gma-u.5
for
100796958
vvi-u.5
for
100249946
ppo-u.5
for
7467601
mtr-u.5
for
11438689
mtr-u.5
for
11426971
sly-u.5
for
101246818
sly-u.5
for
101244543
osa-u.5
for
4347726
zma-u.5
for
100277397


Ortholog ID: 7337
Species bna bna bra ath ghi ghi cit gma gma vvi ppo mtr mtr sly sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC106372609 LOC106450523 LOC103847418 AT5G02850 LOC107886154 LOC107949715 LOC102619807 LOC100796958 LOC100812071 LOC100249946 LOC7467601 LOC11438689 LOC11426971 LOC101246818 LOC101244543 LOC102580997 LOC107829302 LOC107814746 LOC4347726 LOC100277397 LOC123104622 LOC123112891 LOC123400179 LOC8067287 LOC100835981
Function* mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4 hydroxyproline-rich glycoprotein family protein mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4-like mediator of RNA polymerase II transcription subunit 4 Mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4 mediator of RNA polymerase II transcription subunit 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi03015 mRNA surveillance pathway 2
vvi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03040 Spliceosome 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
sot03018 RNA degradation 2
sot03250 Viral life cycle - HIV-1 2
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03050 Proteasome 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106372609 106450523 103847418 831762 107886154 107949715 102619807 100796958 100812071 100249946 7467601 11438689 11426971 101246818 101244543 102580997 107829302 107814746 4347726 100277397 123104622 123112891 123400179 8067287 100835981
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