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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106375912   shikimate kinase 1, chloroplastic 
 ath-u.5   SK1   shikimate kinase 1 
 ath-u.5   SK2   shikimate kinase 2 
 gma-u.5   100807736   shikimate kinase-like protein 
 gma-u.5   100784290   shikimate kinase 1, chloroplastic 
 vvi-u.5   100262762   shikimate kinase 
 vvi-u.5   100244261   shikimate kinase 3, chloroplastic 
 ppo-u.5   7486337   shikimate kinase 1, chloroplastic 
 ppo-u.5   7474813   shikimate kinase, chloroplastic 
 mtr-u.5   120577441   shikimate kinase 1, chloroplastic 
 sly-u.5   SK   shikimate kinase precursor 
 osa-u.5   4340547   shikimate kinase 2, chloroplastic-like 
 osa-u.5   4337165   shikimate kinase 3, chloroplastic-like 
 osa-u.5   4330732   shikimate kinase 1, chloroplastic-like 
 zma-u.5   100286040   shikimate kinase 
 zma-u.5   100283304   shikimate kinase 
 zma-u.5   100191326   Shikimate kinase 1 chloroplastic 

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Top 50 coexpressed genes to 106375912 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106375912 (bna-r.1 coexpression data)

CoexMap"106375912"


bnaLOC106375912 | Entrez gene ID : 106375912    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 2 2 2 2 1 1 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (155 genes)
bna01230 [list] [network] Biosynthesis of amino acids (773 genes)
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0004765 [list] [network] shikimate kinase activity  (5 genes)  IEA  
Protein XP_013671381.2 [sequence] [blastp]
XP_013671382.1 [sequence] [blastp]
XP_048612249.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 4,  chlo 2,  extr 2,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_013671381.2)
cyto 5,  chlo 2,  nucl 2  (predict for XP_013671382.1)
vacu 4,  chlo 2,  extr 2,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_048612249.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_013671381.2)
other 7  (predict for XP_013671382.1)
scret 9  (predict for XP_048612249.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106375912
ath-u.5
for
SK1
ath-u.5
for
SK2
gma-u.5
for
100807736
gma-u.5
for
100784290
vvi-u.5
for
100262762
vvi-u.5
for
100244261
ppo-u.5
for
7486337
ppo-u.5
for
7474813
mtr-u.5
for
120577441
sly-u.5
for
SK
osa-u.5
for
4340547
osa-u.5
for
4337165
osa-u.5
for
4330732
zma-u.5
for
100286040
zma-u.5
for
100283304
zma-u.5
for
100191326


Ortholog ID: 2879
Species bna bra bra ath ath ghi ghi cit cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi bdi cre
Symbol LOC106420775 LOC103850170 LOC103864307 SK1 SK2 LOC107897604 LOC107947315 LOC102624107 LOC102616277 LOC100797982 LOC100807736 LOC100244261 LOC100262762 LOC7474813 LOC7486337 LOC120577441 SK LOC102589179 LOC107818889 LOC107767446 LOC4337165 LOC4340547 LOC100286040 LOC100191326 LOC123145478 LOC123047183 LOC123412235 LOC123403369 LOC110434391 LOC100831349 CHLRE_10g436350v5
Function* shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1 shikimate kinase 2 shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic-like shikimate kinase, chloroplastic shikimate kinase-like protein shikimate kinase 3, chloroplastic shikimate kinase shikimate kinase, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase precursor shikimate kinase, chloroplastic shikimate kinase, chloroplastic-like shikimate kinase, chloroplastic shikimate kinase 3, chloroplastic-like shikimate kinase 2, chloroplastic-like shikimate kinase Shikimate kinase 1 chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 3, chloroplastic shikimate kinase 2, chloroplastic-like shikimate kinase 1, chloroplastic-like shikimate kinase 1, chloroplastic-like shikimate kinase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 6
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bra01230 Biosynthesis of amino acids 6
bra00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 13
bra00941 Flavonoid biosynthesis 5
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath01200 Carbon metabolism 3
ath00350 Tyrosine metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi01230 Biosynthesis of amino acids 9
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi01230 Biosynthesis of amino acids 7
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01210 2-Oxocarboxylic acid metabolism 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00620 Pyruvate metabolism 2
gma00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 7
vvi04712 Circadian rhythm - plant 3
vvi00940 Phenylpropanoid biosynthesis 3
vvi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 9
vvi01230 Biosynthesis of amino acids 8
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
vvi00941 Flavonoid biosynthesis 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 13
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00670 One carbon pool by folate 5
ppo01240 Biosynthesis of cofactors 5
ppo00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 5
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ppo00940 Phenylpropanoid biosynthesis 3
ppo00941 Flavonoid biosynthesis 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
mtr00270 Cysteine and methionine metabolism 2
mtr01200 Carbon metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
sly00940 Phenylpropanoid biosynthesis 6
sly00360 Phenylalanine metabolism 3
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sot01230 Biosynthesis of amino acids 9
sot00940 Phenylpropanoid biosynthesis 5
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 5
osa01230 Biosynthesis of amino acids 4
osa00941 Flavonoid biosynthesis 3
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
osa00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
osa01230 Biosynthesis of amino acids 5
osa00360 Phenylalanine metabolism 3
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00710 Carbon fixation by Calvin cycle 3
zma00010 Glycolysis / Gluconeogenesis 3
zma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00230 Purine metabolism 2
tae00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00360 Phenylalanine metabolism 4
hvu00940 Phenylpropanoid biosynthesis 4
hvu01230 Biosynthesis of amino acids 3
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu01230 Biosynthesis of amino acids 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 10
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
sbi01200 Carbon metabolism 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106420775 103850170 103864307 816730 830108 107897604 107947315 102624107 102616277 100797982 100807736 100244261 100262762 7474813 7486337 120577441 544078 102589179 107818889 107767446 4337165 4340547 100286040 100191326 123145478 123047183 123412235 123403369 110434391 100831349 5716011
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