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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106376728   sm-like protein LSM3B 
 bna-r.1   125589161   sm-like protein LSM3B 
 bna-r.1   106353502   sm-like protein LSM3B 
 bna-r.1   106351611   sm-like protein LSM3A 
 bra-r.6   103832139   sm-like protein LSM3B 
 bra-r.6   103830597   sm-like protein LSM3B 
 bra-r.6   103853050   sm-like protein LSM3B 
 ath-u.5   LSM3A   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM3B   Small nuclear ribonucleoprotein family protein 
 ghi-r.1   121217861   sm-like protein LSM3B 
 ghi-r.1   107932177   sm-like protein LSM3A 
 ghi-r.1   107914111   sm-like protein LSM3B 
 cit-r.1   102612141   sm-like protein LSM3B 
 gma-u.5   100499782   uncharacterized LOC100499782 
 gma-u.5   100306547   uncharacterized LOC100306547 
 vvi-u.5   100253870   sm-like protein LSM3B 
 ppo-u.5   7467821   sm-like protein LSM3B 
 ppo-u.5   7469218   sm-like protein LSM3B 
 mtr-u.5   11446185   sm-like protein LSM3A 
 sly-u.5   101264277   sm-like protein LSM3A 
 sot-r.1   102597966   sm-like protein LSM3A 
 nta-r.1   107815981   sm-like protein LSM3A 
 nta-r.1   107822166   sm-like protein LSM3A 
 nta-r.1   107792783   sm-like protein LSM3A 
 osa-u.5   4325074   sm-like protein LSM3A 
 zma-u.5   100194361   uncharacterized LOC100194361 
 tae-r.2   123062718   sm-like protein LSM3A 
 tae-r.2   123079875   sm-like protein LSM3A 
 tae-r.2   123057691   sm-like protein LSM3A 
 hvu-r.1   123446676   sm-like protein LSM3A 
 hvu-r.1   123444803   sm-like protein LSM3A 
 sbi-r.1   8060974   sm-like protein LSM3B 
 bdi-r.1   100822834   sm-like protein LSM3B 
 cre-r.1   CHLRE_16g662300v5   uncharacterized protein 

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Top 50 coexpressed genes to 106376728 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106376728 (bna-r.1 coexpression data)

CoexMap"106376728"


bnaLOC106376728 | Entrez gene ID : 106376728    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 1 2 1 2 1 1 1 3 1 1 3 2 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0033962 [list] [network] P-body assembly  (48 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (27 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (34 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0000932 [list] [network] P-body  (160 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013672298.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  extr 1,  chlo 1,  E.R. 1,  cysk 1,  golg 1  (predict for XP_013672298.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013672298.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106376728
bna-r.1
for
125589161
bna-r.1
for
106353502
bna-r.1
for
106351611
bra-r.6
for
103832139
bra-r.6
for
103830597
bra-r.6
for
103853050
ath-u.5
for
LSM3A
ath-u.5
for
LSM3B
ghi-r.1
for
121217861
ghi-r.1
for
107932177
ghi-r.1
for
107914111
cit-r.1
for
102612141
gma-u.5
for
100499782
gma-u.5
for
100306547
vvi-u.5
for
100253870
ppo-u.5
for
7467821
ppo-u.5
for
7469218
mtr-u.5
for
11446185
sly-u.5
for
101264277
sot-r.1
for
102597966
nta-r.1
for
107815981
nta-r.1
for
107822166
nta-r.1
for
107792783
osa-u.5
for
4325074
zma-u.5
for
100194361
tae-r.2
for
123062718
tae-r.2
for
123079875
tae-r.2
for
123057691
hvu-r.1
for
123446676
hvu-r.1
for
123444803
sbi-r.1
for
8060974
bdi-r.1
for
100822834
cre-r.1
for
CHLRE_16g662300v5


Ortholog ID: 4465
Species bna bna bna bra bra bra ath ath ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC106376728 LOC106353502 LOC106353517 LOC103832139 LOC103830597 LOC103872911 LSM3A LSM3B LOC121217861 LOC107932177 LOC107914111 LOC102612141 LOC100499782 LOC100306547 LOC100253870 LOC7467821 LOC7469218 LOC11446185 LOC101264277 LOC102597966 LOC107815981 LOC107822166 LOC107792783 LOC4325074 LOC100194361 LOC123057691 LOC123071535 LOC123182155 LOC123446676 LOC123444803 LOC8060974 LOC100822834 CHLRE_16g662300v5
Function* sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3A Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3B sm-like protein LSM3B uncharacterized LOC100499782 uncharacterized LOC100306547 sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A uncharacterized LOC100194361 sm-like protein LSM3A sm-like protein LSM3B sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3A sm-like protein LSM3B sm-like protein LSM3B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03018 RNA degradation 6
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra00190 Oxidative phosphorylation 2
bra03018 RNA degradation 2
bra03010 Ribosome 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 2
bra04148 Efferocytosis 2
bra04517 IgSF CAM signaling 2
bra04518 Integrin signaling 2
bra04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03018 RNA degradation 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03050 Proteasome 3
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03040 Spliceosome 4
gma03018 RNA degradation 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03018 RNA degradation 4
ppo03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo00190 Oxidative phosphorylation 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 3
sot03050 Proteasome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta03040 Spliceosome 6
nta03018 RNA degradation 4
nta03020 RNA polymerase 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03040 Spliceosome 6
nta03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 11
nta03018 RNA degradation 9
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03040 Spliceosome 6
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03018 RNA degradation 4
zma03008 Ribosome biogenesis in eukaryotes 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 9
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 8
tae03040 Spliceosome 8
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 5
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 8
sbi03010 Ribosome 5
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03050 Proteasome 3
bdi03010 Ribosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03018 RNA degradation 2
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106376728 106353502 106353517 103832139 103830597 103872911 838714 844021 121217861 107932177 107914111 102612141 100499782 100306547 100253870 7467821 7469218 11446185 101264277 102597966 107815981 107822166 107792783 4325074 100194361 123057691 123071535 123182155 123446676 123444803 8060974 100822834 5723508
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