Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106377133   transcription initiation factor IIF subunit beta-like 
 bna-r.1   106397274   transcription initiation factor IIF subunit beta 
 bra-r.6   103852957   transcription initiation factor IIF subunit beta 
 ath-u.5   AT1G75510   Transcription initiation factor IIF, beta subunit 
 ghi-r.1   107904967   transcription initiation factor IIF subunit beta 
 ghi-r.1   107934168   general transcription factor IIF subunit 2 
 ghi-r.1   107957591   transcription initiation factor IIF subunit beta 
 cit-r.1   102608223   transcription initiation factor IIF subunit beta 
 cit-r.1   102610310   uncharacterized LOC102610310 
 gma-u.5   100788473   transcription initiation factor IIF subunit beta-like 
 gma-u.5   100790941   general transcription factor IIF subunit 2 
 gma-u.5   100784080   transcription initiation factor IIF subunit beta 
 vvi-u.5   100267659   uncharacterized LOC100267659 
 vvi-u.5   100263243   uncharacterized LOC100263243 
 ppo-u.5   7479707   transcription initiation factor IIF subunit beta 
 ppo-u.5   7493937   transcription initiation factor IIF subunit beta 
 mtr-u.5   25490245   transcription initiation factor IIF subunit beta 
 sly-u.5   101263130   transcription initiation factor IIF subunit beta 
 sly-u.5   101257024   uncharacterized LOC101257024 
 sot-r.1   102606124   transcription initiation factor IIF subunit beta 
 nta-r.1   107785756   transcription initiation factor IIF subunit beta 
 nta-r.1   107765443   transcription initiation factor IIF subunit beta 
 osa-u.5   9270266   transcription initiation factor IIF subunit beta 
 osa-u.5   4339276   uncharacterized LOC4339276 
 zma-u.5   100283439   uncharacterized LOC100283439 
 zma-u.5   100216909   Transcription initiation factor IIF beta subunit 
 tae-r.2   123062045   general transcription factor IIF subunit 2 
 hvu-r.1   123447597   general transcription factor IIF subunit 2 
 sbi-r.1   8080095   general transcription factor IIF subunit 2 
 bdi-r.1   100843964   general transcription factor IIF subunit 2 

close


Top 50 coexpressed genes to 106377133 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 106377133 (bna-r.1 coexpression data)

CoexMap"106377133"


bnaLOC106377133 | Entrez gene ID : 106377133    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 2 3 2 2 1 2 1 2 2 2 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (198 genes)  IEA  
GO CC
GO:0005674 [list] [network] transcription factor TFIIF complex  (16 genes)  IEA  
GO MF
Protein XP_048603652.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cysk 1  (predict for XP_048603652.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048603652.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106377133
bna-r.1
for
106397274
bra-r.6
for
103852957
ath-u.5
for
AT1G75510
ghi-r.1
for
107904967
ghi-r.1
for
107934168
ghi-r.1
for
107957591
cit-r.1
for
102608223
cit-r.1
for
102610310
gma-u.5
for
100788473
gma-u.5
for
100790941
gma-u.5
for
100784080
vvi-u.5
for
100267659
vvi-u.5
for
100263243
ppo-u.5
for
7479707
ppo-u.5
for
7493937
mtr-u.5
for
25490245
sly-u.5
for
101263130
sly-u.5
for
101257024
sot-r.1
for
102606124
nta-r.1
for
107785756
nta-r.1
for
107765443
osa-u.5
for
9270266
osa-u.5
for
4339276
zma-u.5
for
100283439
zma-u.5
for
100216909
tae-r.2
for
123062045
hvu-r.1
for
123447597
sbi-r.1
for
8080095
bdi-r.1
for
100843964


Ortholog ID: 3351
Species bna bra ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr sly sly sot nta nta osa osa zma zma tae tae hvu sbi bdi
Symbol LOC106397274 LOC103852957 AT1G75510 LOC107957591 LOC107915898 LOC107922337 LOC102608223 LOC102610310 LOC100788473 LOC100790941 LOC100784080 LOC100267659 LOC100263243 LOC7479707 LOC7493937 LOC25490245 LOC101263130 LOC101257024 LOC102606124 LOC107785756 LOC107765443 LOC9270266 LOC4339276 LOC100283439 LOC100216909 LOC123062045 LOC123139415 LOC123447597 LOC8080095 LOC100843964
Function* transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta Transcription initiation factor IIF, beta subunit transcription initiation factor IIF subunit beta general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta uncharacterized LOC102610310 transcription initiation factor IIF subunit beta-like general transcription factor IIF subunit 2 transcription initiation factor IIF subunit beta uncharacterized LOC100267659 uncharacterized LOC100263243 transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta uncharacterized LOC101257024 transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta transcription initiation factor IIF subunit beta uncharacterized LOC4339276 uncharacterized LOC100283439 Transcription initiation factor IIF beta subunit general transcription factor IIF subunit 2 general transcription factor IIF subunit 2 general transcription factor IIF subunit 2 general transcription factor IIF subunit 2 general transcription factor IIF subunit 2
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03040 Spliceosome 4
bna00860 Porphyrin metabolism 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 5
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 3
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00261 Monobactam biosynthesis 2
ghi00270 Cysteine and methionine metabolism 2
ghi00300 Lysine biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03022 Basal transcription factors 2
ghi04144 Endocytosis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
gma04142 Lysosome 4
gma04144 Endocytosis 4
gma05100 Bacterial invasion of epithelial cells 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma03022 Basal transcription factors 2
gma03010 Ribosome 2
gma00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00020 Citrate cycle (TCA cycle) 3
vvi01200 Carbon metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00620 Pyruvate metabolism 2
vvi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00514 Other types of O-glycan biosynthesis 2
nta03022 Basal transcription factors 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00514 Other types of O-glycan biosynthesis 2
nta03022 Basal transcription factors 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
osa03022 Basal transcription factors 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106397274 103852957 843887 107957591 107915898 107922337 102608223 102610310 100788473 100790941 100784080 100267659 100263243 7479707 7493937 25490245 101263130 101257024 102606124 107785756 107765443 9270266 4339276 100283439 100216909 123062045 123139415 123447597 8080095 100843964
The preparation time of this page was 0.2 [sec].