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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106380532   sm-like protein LSM1B 
 bna-r.1   106391190   sm-like protein LSM1B 
 bna-r.1   111215720   sm-like protein LSM1B 
 bna-r.1   106439350   sm-like protein LSM1B 
 bra-r.6   103842663   sm-like protein LSM1A 
 bra-r.6   103842307   sm-like protein LSM1B 
 bra-r.6   103859552   sm-like protein LSM1B 
 ath-u.5   LSM1B   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM1A   Small nuclear ribonucleoprotein family protein 
 ghi-r.1   107932265   sm-like protein LSM1B 
 ghi-r.1   107951090   sm-like protein LSM1B 
 ghi-r.1   107958367   sm-like protein LSM1B 
 cit-r.1   102617712   sm-like protein LSM1B 
 cit-r.1   102608898   sm-like protein LSM1A 
 gma-u.5   100306352   uncharacterized LOC100306352 
 gma-u.5   100812441   sm-like protein LSM1B 
 vvi-u.5   100249828   sm-like protein LSM1B 
 vvi-u.5   100250857   sm-like protein LSM1B 
 ppo-u.5   18094708   sm-like protein LSM1B 
 ppo-u.5   7475679   sm-like protein LSM1B 
 mtr-u.5   11421251   sm-like protein LSM1B 
 mtr-u.5   11444969   sm-like protein LSM1B 
 sly-u.5   101254180   sm-like protein LSM1B 
 sly-u.5   101252597   sm-like protein LSM1B 
 sot-r.1   102596351   sm-like protein LSM1B 
 sot-r.1   102599663   sm-like protein LSM1B 
 nta-r.1   107824597   sm-like protein LSM1B 
 nta-r.1   107809229   sm-like protein LSM1B 
 nta-r.1   107805614   sm-like protein LSM1B 
 osa-u.5   4335963   sm-like protein LSM1B 
 zma-u.5   100280518   small nuclear ribonucleoprotein LSM1 
 zma-u.5   100280029   uncharacterized LOC100280029 
 tae-r.2   123045581   sm-like protein LSM1B 
 tae-r.2   123189325   sm-like protein LSM1B 
 tae-r.2   123053420   sm-like protein LSM1B 
 hvu-r.1   123426834   sm-like protein LSM1B 
 sbi-r.1   8080362   sm-like protein LSM1B 
 bdi-r.1   100824555   sm-like protein LSM1B 
 bdi-r.1   100825845   sm-like protein LSM1B 
 cre-r.1   CHLRE_12g538750v5   uncharacterized protein 

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Top 50 coexpressed genes to 106380532 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106380532 (bna-r.1 coexpression data)

CoexMap"106380532"


bnaLOC106380532 | Entrez gene ID : 106380532    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 2 2 2 2 2 2 3 1 2 3 1 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (40 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (27 genes)  IEA  
GO:0000932 [list] [network] P-body  (160 genes)  IEA  
GO MF
GO:0000339 [list] [network] RNA cap binding  (39 genes)  IEA  
Protein XP_048595501.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  extr 1,  chlo 1,  nucl 1,  cysk 1,  golg 1,  cysk_nucl 1  (predict for XP_048595501.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048595501.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106380532
bna-r.1
for
106391190
bna-r.1
for
111215720
bna-r.1
for
106439350
bra-r.6
for
103842663
bra-r.6
for
103842307
bra-r.6
for
103859552
ath-u.5
for
LSM1B
ath-u.5
for
LSM1A
ghi-r.1
for
107932265
ghi-r.1
for
107951090
ghi-r.1
for
107958367
cit-r.1
for
102617712
cit-r.1
for
102608898
gma-u.5
for
100306352
gma-u.5
for
100812441
vvi-u.5
for
100249828
vvi-u.5
for
100250857
ppo-u.5
for
18094708
ppo-u.5
for
7475679
mtr-u.5
for
11421251
mtr-u.5
for
11444969
sly-u.5
for
101254180
sly-u.5
for
101252597
sot-r.1
for
102596351
sot-r.1
for
102599663
nta-r.1
for
107824597
nta-r.1
for
107809229
nta-r.1
for
107805614
osa-u.5
for
4335963
zma-u.5
for
100280518
zma-u.5
for
100280029
tae-r.2
for
123045581
tae-r.2
for
123189325
tae-r.2
for
123053420
hvu-r.1
for
123426834
sbi-r.1
for
8080362
bdi-r.1
for
100824555
bdi-r.1
for
100825845
cre-r.1
for
CHLRE_12g538750v5


Ortholog ID: 2812
Species bna bna bna bra bra bra ath ath ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC111215720 LOC106365290 LOC106452252 LOC103842663 LOC103842307 LOC103859552 LSM1B LSM1A LOC107906055 LOC102617712 LOC102608898 LOC100306352 LOC100812441 LOC100249828 LOC100250857 LOC18094708 LOC7475679 LOC11421251 LOC11444969 LOC101254180 LOC101252597 LOC102596351 LOC102599663 LOC107809229 LOC107805614 LOC107782860 LOC4335963 LOC100280518 LOC100280029 LOC123045581 LOC123189325 LOC123053420 LOC123426834 LOC8080362 LOC100824555 LOC100825845 CHLRE_12g538750v5
Function* sm-like protein LSM1B sm-like protein LSM1A sm-like protein LSM1B sm-like protein LSM1A sm-like protein LSM1B sm-like protein LSM1B Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1A uncharacterized LOC100306352 sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B small nuclear ribonucleoprotein LSM1 uncharacterized LOC100280029 sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna04382 Cornified envelope formation 5
bna00970 Aminoacyl-tRNA biosynthesis 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00190 Oxidative phosphorylation 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath04144 Endocytosis 3
ath03018 RNA degradation 2
ath03015 mRNA surveillance pathway 2
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 7
ghi03083 Polycomb repressive complex 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi03040 Spliceosome 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03040 Spliceosome 3
cit03420 Nucleotide excision repair 2
cit03060 Protein export 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03018 RNA degradation 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03018 RNA degradation 3
gma03040 Spliceosome 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00910 Nitrogen metabolism 3
vvi01310 Nitrogen cycle 2
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03018 RNA degradation 4
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03018 RNA degradation 3
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03018 RNA degradation 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04145 Phagosome 2
nta04148 Efferocytosis 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04136 Autophagy - other 2
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 5
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 10
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 12
tae03015 mRNA surveillance pathway 4
tae04382 Cornified envelope formation 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 11
tae00230 Purine metabolism 3
tae00730 Thiamine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03050 Proteasome 3
cre00190 Oxidative phosphorylation 3
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 111215720 106365290 106452252 103842663 103842307 103859552 820624 838495 107906055 102617712 102608898 100306352 100812441 100249828 100250857 18094708 7475679 11421251 11444969 101254180 101252597 102596351 102599663 107809229 107805614 107782860 4335963 100280518 100280029 123045581 123189325 123053420 123426834 8080362 100824555 100825845 5718440
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