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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106380726   zinc finger CCCH domain-containing protein 25-like 
 bna-r.1   106386733   cold-inducible RNA-binding protein A 
 bna-r.1   106425672   zinc finger CCCH domain-containing protein 25 
 bra-r.6   103851314   zinc finger CCCH domain-containing protein 25 
 ath-u.5   AT5G19960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ghi-r.1   107907244   zinc finger CCCH domain-containing protein 25 
 ghi-r.1   107907427   zinc finger CCCH domain-containing protein 25 
 cit-r.1   102608322   glycine-rich RNA-binding protein RZ1A 
 gma-u.5   100816804   probable splicing factor, arginine/serine-rich 6 
 gma-u.5   100797556   glycine-rich RNA-binding protein RZ1B 
 vvi-u.5   100245744   uncharacterized LOC100245744 
 ppo-u.5   112325085   zinc finger CCCH domain-containing protein 25 
 mtr-u.5   11442835   RNA-binding protein 25 
 nta-r.1   107823355   uncharacterized LOC107823355 
 nta-r.1   107798967   uncharacterized LOC107798967 
 osa-u.5   4328686   uncharacterized LOC4328686 
 zma-u.5   100276452   uncharacterized LOC100276452 
 zma-u.5   100303796   uncharacterized LOC100303796 
 tae-r.2   123136884   U1 small nuclear ribonucleoprotein 70 kDa 
 tae-r.2   123127268   U1 small nuclear ribonucleoprotein 70 kDa 
 tae-r.2   123144340   U1 small nuclear ribonucleoprotein 70 kDa 
 hvu-r.1   123401234   zinc finger CCCH domain-containing protein 13 
 sbi-r.1   110434697   uncharacterized protein DDB_G0284459 
 bdi-r.1   100826556   U1 small nuclear ribonucleoprotein 70 kDa 

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Top 50 coexpressed genes to 106380726 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106380726 (bna-r.1 coexpression data)

CoexMap"106380726"


bnaLOC106380726 | Entrez gene ID : 106380726    
Species bna bra ath ghi cit gma vvi ppo mtr nta osa zma tae hvu sbi bdi sot cre sly
Paralog 3 1 1 2 1 2 1 1 1 2 1 2 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013676007.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  cysk 1  (predict for XP_013676007.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013676007.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106380726
bna-r.1
for
106386733
bna-r.1
for
106425672
bra-r.6
for
103851314
ath-u.5
for
AT5G19960
ghi-r.1
for
107907244
ghi-r.1
for
107907427
cit-r.1
for
102608322
gma-u.5
for
100816804
gma-u.5
for
100797556
vvi-u.5
for
100245744
ppo-u.5
for
112325085
mtr-u.5
for
11442835
nta-r.1
for
107823355
nta-r.1
for
107798967
osa-u.5
for
4328686
zma-u.5
for
100276452
zma-u.5
for
100303796
tae-r.2
for
123136884
tae-r.2
for
123127268
tae-r.2
for
123144340
hvu-r.1
for
123401234
sbi-r.1
for
110434697
bdi-r.1
for
100826556


Ortholog ID: 10948
Species bna bna bna bra ath ghi ghi cit gma gma vvi ppo mtr nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC106380726 LOC106386733 LOC106425672 LOC103851314 AT5G19960 LOC107907244 LOC107907427 LOC102608322 LOC100816804 LOC100797556 LOC100245744 LOC112325085 LOC11442835 LOC107823355 LOC107798967 LOC4328686 LOC100276452 LOC100303796 LOC123136884 LOC123127268 LOC123144340 LOC123401234 LOC110434697 LOC100826556
Function* zinc finger CCCH domain-containing protein 25-like cold-inducible RNA-binding protein A zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 RNA-binding (RRM/RBD/RNP motifs) family protein zinc finger CCCH domain-containing protein 25 zinc finger CCCH domain-containing protein 25 glycine-rich RNA-binding protein RZ1A probable splicing factor, arginine/serine-rich 6 glycine-rich RNA-binding protein RZ1B uncharacterized LOC100245744 zinc finger CCCH domain-containing protein 25 RNA-binding protein 25 uncharacterized LOC107823355 uncharacterized LOC107798967 uncharacterized LOC4328686 uncharacterized LOC100276452 uncharacterized LOC100303796 U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa zinc finger CCCH domain-containing protein 13 uncharacterized protein DDB_G0284459 U1 small nuclear ribonucleoprotein 70 kDa
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna03250 Viral life cycle - HIV-1 6
bna00790 Folate biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00261 Monobactam biosynthesis 2
sbi00300 Lysine biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106380726 106386733 106425672 103851314 832118 107907244 107907427 102608322 100816804 100797556 100245744 112325085 11442835 107823355 107798967 4328686 100276452 100303796 123136884 123127268 123144340 123401234 110434697 100826556
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