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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106382908   transcription elongation factor SPT4 homolog 2 
 ath-u.5   AT5G08565   Transcription initiation Spt4-like protein 
 ath-u.5   SPT42   SPT4 homolog 2 
 gma-u.5   100812057   transcription elongation factor SPT4 homolog 1 
 gma-u.5   100306659   transcription elongation factor SPT4-like protein 
 vvi-u.5   100261013   transcription elongation factor SPT4 homolog 2 
 ppo-u.5   7455510   transcription elongation factor SPT4 homolog 2 
 ppo-u.5   7454302   transcription elongation factor SPT4 homolog 2 
 mtr-u.5   11444230   transcription elongation factor SPT4 homolog 2 
 mtr-u.5   11430820   transcription elongation factor SPT4 homolog 2 
 sly-u.5   101248963   transcription elongation factor SPT4 homolog 2-like 
 osa-u.5   4343956   transcription elongation factor SPT4 homolog 1 
 zma-u.5   103633439   uncharacterized LOC103633439 
 zma-u.5   100284208   transcription elongation factor SPT4 

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Top 50 coexpressed genes to 106382908 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106382908 (bna-r.1 coexpression data)

CoexMap"106382908"


bnaLOC106382908 | Entrez gene ID : 106382908    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 2 2 1 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03250 [list] [network] Viral life cycle - HIV-1 (118 genes)
GO BP
GO:0034243 [list] [network] regulation of transcription elongation by RNA polymerase II  (95 genes)  IEA  
GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation  (116 genes)  IEA  
GO:0006325 [list] [network] chromatin organization  (438 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (684 genes)  IEA  
GO CC
GO:0032044 [list] [network] DSIF complex  (13 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000993 [list] [network] RNA polymerase II complex binding  (46 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
Protein XP_048603232.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for XP_048603232.1)
Subcellular
localization
TargetP
other 4,  mito 3  (predict for XP_048603232.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106382908
ath-u.5
for
AT5G08565
ath-u.5
for
SPT42
gma-u.5
for
100812057
gma-u.5
for
100306659
vvi-u.5
for
100261013
ppo-u.5
for
7455510
ppo-u.5
for
7454302
mtr-u.5
for
11444230
mtr-u.5
for
11430820
sly-u.5
for
101248963
osa-u.5
for
4343956
zma-u.5
for
103633439
zma-u.5
for
100284208


Ortholog ID: 5826
Species bna bna bra ath ath ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC106405164 LOC106384955 LOC103855061 AT5G08565 SPT42 LOC107898885 LOC107894924 LOC102612523 LOC100812057 LOC100306659 LOC100261013 LOC7455510 LOC7454302 LOC11444230 LOC11430820 LOC101248963 LOC102600981 LOC107773283 LOC107811012 LOC4343956 LOC103633439 LOC100284208 LOC123044151 LOC123187897 LOC123425238 LOC8079217 LOC100826631 CHLRE_02g116300v5
Function* transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 2 Transcription initiation Spt4-like protein SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4-like protein transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2-like transcription elongation factor SPT4 homolog 2-like transcription elongation factor SPT4 homolog 2 transcription elongation factor SPT4 homolog 2-like transcription elongation factor SPT4 homolog 1 uncharacterized LOC103633439 transcription elongation factor SPT4 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1-like transcription elongation factor SPT4 homolog 1 transcription elongation factor SPT4 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
bna03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 9
ghi03250 Viral life cycle - HIV-1 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03420 Nucleotide excision repair 2
cit04120 Ubiquitin mediated proteolysis 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
ppo03040 Spliceosome 2
ppo04145 Phagosome 2
ppo04148 Efferocytosis 2
ppo04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03020 RNA polymerase 4
mtr03010 Ribosome 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03420 Nucleotide excision repair 2
sot03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03060 Protein export 2
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04120 Ubiquitin mediated proteolysis 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106405164 106384955 103855061 830757 836487 107898885 107894924 102612523 100812057 100306659 100261013 7455510 7454302 11444230 11430820 101248963 102600981 107773283 107811012 4343956 103633439 100284208 123044151 123187897 123425238 8079217 100826631 5725425
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