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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106387236   DNA-directed RNA polymerase II subunit 7 
 ath-u.5   NRPB7   DNA-directed RNA polymerase II 
 ghi-r.1   107932501   DNA-directed RNA polymerase II subunit RPB7 
 ghi-r.1   107953099   DNA-directed RNA polymerase II subunit RPB7 
 cit-r.1   102612216   DNA-directed RNA polymerase II subunit RPB7 
 gma-u.5   100793057   DNA-directed RNA polymerase II subunit RPB7 
 vvi-u.5   100248358   DNA-directed RNA polymerase II subunit RPB7 
 ppo-u.5   7491348   DNA-directed RNA polymerase II subunit RPB7 
 mtr-u.5   11407767   DNA-directed RNA polymerase II subunit RPB7 
 sly-u.5   101259753   DNA-directed RNA polymerase II subunit RPB7 
 sot-r.1   102590696   DNA-directed RNA polymerase II subunit RPB7 
 nta-r.1   107803663   DNA-directed RNA polymerase II subunit RPB7 
 nta-r.1   107784900   DNA-directed RNA polymerase II subunit RPB7 
 nta-r.1   107759088   DNA-directed RNA polymerase II subunit RPB7 
 osa-u.5   4338726   DNA-directed RNA polymerase II subunit RPB7 
 zma-u.5   100283223   DNA-directed RNA polymerase II 19 kDa polypeptide 
 tae-r.2   123181946   DNA-directed RNA polymerase II subunit RPB7 
 tae-r.2   123132111   DNA-directed RNA polymerase II subunit RPB7 
 tae-r.2   123055038   DNA-directed RNA polymerase II subunit RPB7 
 hvu-r.1   123441807   DNA-directed RNA polymerase II subunit RPB7 
 sbi-r.1   8076875   DNA-directed RNA polymerase II subunit RPB7 
 sbi-r.1   8078788   DNA-directed RNA polymerase II subunit RPB7 
 bdi-r.1   100821003   DNA-directed RNA polymerase II subunit RPB7 
 cre-r.1   CHLRE_16g667750v5   uncharacterized protein 

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Top 50 coexpressed genes to 106387236 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106387236 (bna-r.1 coexpression data)

CoexMap"106386472"


bnaLOC106386472 | Entrez gene ID : 106386472    
Species bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 1 1 2 1 1 1 1 1 1 1 3 1 1 3 1 2 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0060213 [list] [network] positive regulation of nuclear-transcribed mRNA poly(A) tail shortening  (6 genes)  IEA  
GO:0045948 [list] [network] positive regulation of translational initiation  (15 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO:0000932 [list] [network] P-body  (160 genes)  IEA  
GO MF
GO:0031369 [list] [network] translation initiation factor binding  (54 genes)  IEA  
GO:0003727 [list] [network] single-stranded RNA binding  (72 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (274 genes)  IEA  
Protein XP_048605301.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  chlo_mito 2,  cyto 2,  nucl 1,  vacu 1,  cyto_plas 1  (predict for XP_048605301.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_048605301.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106387236
ath-u.5
for
NRPB7
ghi-r.1
for
107932501
ghi-r.1
for
107953099
cit-r.1
for
102612216
gma-u.5
for
100793057
vvi-u.5
for
100248358
ppo-u.5
for
7491348
mtr-u.5
for
11407767
sly-u.5
for
101259753
sot-r.1
for
102590696
nta-r.1
for
107803663
nta-r.1
for
107784900
nta-r.1
for
107759088
osa-u.5
for
4338726
zma-u.5
for
100283223
tae-r.2
for
123181946
tae-r.2
for
123132111
tae-r.2
for
123055038
hvu-r.1
for
123441807
sbi-r.1
for
8076875
sbi-r.1
for
8078788
bdi-r.1
for
100821003
cre-r.1
for
CHLRE_16g667750v5


Ortholog ID: 6107
Species bna bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC106387236 LOC103851602 NRPB7 LOC107932501 LOC107953099 LOC102612216 LOC100793057 LOC100248358 LOC7491348 LOC11407767 LOC101259753 LOC102590696 LOC107803663 LOC107784900 LOC107759088 LOC4338726 LOC100283223 LOC123181946 LOC123132111 LOC123055038 LOC123441807 LOC8076875 LOC8078788 LOC100821003 CHLRE_16g667750v5
Function* DNA-directed RNA polymerase II subunit 7 DNA-directed RNA polymerase II subunit 7 DNA-directed RNA polymerase II DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II 19 kDa polypeptide DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB7 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit03010 Ribosome 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 4
ppo03020 RNA polymerase 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03020 RNA polymerase 3
sly03010 Ribosome 2
sly03018 RNA degradation 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta03010 Ribosome 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03420 Nucleotide excision repair 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03420 Nucleotide excision repair 6
tae03050 Proteasome 3
tae03440 Homologous recombination 3
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 4
bdi00190 Oxidative phosphorylation 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03013 Nucleocytoplasmic transport 2
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106387236 103851602 836036 107932501 107953099 102612216 100793057 100248358 7491348 11407767 101259753 102590696 107803663 107784900 107759088 4338726 100283223 123181946 123132111 123055038 123441807 8076875 8078788 100821003 5717707
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