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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106390008   putative exosome complex component rrp40 
 bna-r.1   111199733   putative exosome complex component rrp40 
 bra-r.6   103834571   putative exosome complex component rrp40 
 ath-u.5   AT2G25355   PNAS-3-like protein 
 ath-u.5   AT4G32175   PNAS-3-like protein 
 ghi-r.1   107933413   putative exosome complex component rrp40 
 ghi-r.1   107887158   putative exosome complex component rrp40 
 cit-r.1   102617858   uncharacterized LOC102617858 
 gma-u.5   100809941   putative exosome complex component rrp40-like 
 gma-u.5   100791930   putative exosome complex component rrp40 
 vvi-u.5   100241656   uncharacterized LOC100241656 
 ppo-u.5   7458031   uncharacterized LOC7458031 
 mtr-u.5   11422163   putative exosome complex component rrp40 
 sly-u.5   101262526   uncharacterized LOC101262526 
 sot-r.1   102594990   putative exosome complex component rrp40 
 nta-r.1   107811937   uncharacterized LOC107811937 
 nta-r.1   107766912   uncharacterized LOC107766912 
 nta-r.1   107780643   uncharacterized LOC107780643 
 osa-u.5   4324917   uncharacterized LOC4324917 
 osa-u.5   4327851   uncharacterized LOC4327851 
 zma-u.5   103651400   putative exosome complex component rrp40 
 zma-u.5   100282437   exosome complex exonuclease RRP40 
 tae-r.2   123078722   putative exosome complex component rrp40 
 tae-r.2   123070275   putative exosome complex component rrp40 
 tae-r.2   123061649   putative exosome complex component rrp40 
 hvu-r.1   123444021   putative exosome complex component rrp40 
 sbi-r.1   8061812   putative exosome complex component rrp40 
 bdi-r.1   100843769   putative exosome complex component rrp40 
 cre-r.1   CHLRE_07g319900v5   uncharacterized protein 

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Top 50 coexpressed genes to 106390008 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106390008 (bna-r.1 coexpression data)

CoexMap"106390008"


bnaLOC106390008 | Entrez gene ID : 106390008    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 2 1 2 1 1 1 1 1 3 2 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0071034 [list] [network] CUT catabolic process  (14 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (25 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (25 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (25 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (26 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (28 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (40 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013685831.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 1,  vacu 1,  E.R._vacu 1,  mito 1,  extr 1,  golg 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_013685831.2)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for XP_013685831.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106390008
bna-r.1
for
111199733
bra-r.6
for
103834571
ath-u.5
for
AT2G25355
ath-u.5
for
AT4G32175
ghi-r.1
for
107933413
ghi-r.1
for
107887158
cit-r.1
for
102617858
gma-u.5
for
100809941
gma-u.5
for
100791930
vvi-u.5
for
100241656
ppo-u.5
for
7458031
mtr-u.5
for
11422163
sly-u.5
for
101262526
sot-r.1
for
102594990
nta-r.1
for
107811937
nta-r.1
for
107766912
nta-r.1
for
107780643
osa-u.5
for
4324917
osa-u.5
for
4327851
zma-u.5
for
103651400
zma-u.5
for
100282437
tae-r.2
for
123078722
tae-r.2
for
123070275
tae-r.2
for
123061649
hvu-r.1
for
123444021
sbi-r.1
for
8061812
bdi-r.1
for
100843769
cre-r.1
for
CHLRE_07g319900v5


Ortholog ID: 7514
Species bna bna bra ath ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106390008 LOC111199733 LOC103834571 AT2G25355 AT4G32175 LOC107933413 LOC107887158 LOC102617858 LOC100809941 LOC100791930 LOC100241656 LOC7458031 LOC11422163 LOC101262526 LOC102594990 LOC107811937 LOC107766912 LOC107780643 LOC4324917 LOC4327851 LOC103651400 LOC100282437 LOC123078722 LOC123070275 LOC123061649 LOC123444021 LOC8061812 LOC100843769 CHLRE_07g319900v5
Function* putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 PNAS-3-like protein PNAS-3-like protein putative exosome complex component rrp40 putative exosome complex component rrp40 uncharacterized LOC102617858 putative exosome complex component rrp40-like putative exosome complex component rrp40 uncharacterized LOC100241656 uncharacterized LOC7458031 putative exosome complex component rrp40 uncharacterized LOC101262526 putative exosome complex component rrp40 uncharacterized LOC107811937 uncharacterized LOC107766912 uncharacterized LOC107780643 uncharacterized LOC4324917 uncharacterized LOC4327851 putative exosome complex component rrp40 exosome complex exonuclease RRP40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath03008 Ribosome biogenesis in eukaryotes 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00902 Monoterpenoid biosynthesis 3
cit03018 RNA degradation 2
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03020 RNA polymerase 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 4
sot00260 Glycine, serine and threonine metabolism 2
sot00460 Cyanoamino acid metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
sot00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03010 Ribosome 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03008 Ribosome biogenesis in eukaryotes 3
cre03420 Nucleotide excision repair 3
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106390008 111199733 103834571 817074 829350 107933413 107887158 102617858 100809941 100791930 100241656 7458031 11422163 101262526 102594990 107811937 107766912 107780643 4324917 4327851 103651400 100282437 123078722 123070275 123061649 123444021 8061812 100843769 5726388
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