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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   111199733   putative exosome complex component rrp40 
 ath-u.5   AT2G25355   PNAS-3-like protein 
 ath-u.5   AT4G32175   PNAS-3-like protein 
 gma-u.5   100809941   putative exosome complex component rrp40-like 
 gma-u.5   100791930   putative exosome complex component rrp40 
 vvi-u.5   100241656   uncharacterized LOC100241656 
 ppo-u.5   7458031   uncharacterized LOC7458031 
 mtr-u.5   11422163   putative exosome complex component rrp40 
 sly-u.5   101262526   uncharacterized LOC101262526 
 osa-u.5   4324917   uncharacterized LOC4324917 
 osa-u.5   4327851   uncharacterized LOC4327851 
 zma-u.5   103651400   putative exosome complex component rrp40 
 zma-u.5   100282437   exosome complex exonuclease RRP40 

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Top 50 coexpressed genes to 111199733 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 111199733 (bna-r.1 coexpression data)

CoexMap"111199733"


bnaLOC111199733 | Entrez gene ID : 111199733    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 2 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0071034 [list] [network] CUT catabolic process  (14 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (25 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (25 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (25 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (26 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (28 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (40 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_022545708.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 1,  vacu 1,  E.R._vacu 1,  mito 1,  extr 1,  golg 1,  cyto_nucl 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_022545708.1)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for XP_022545708.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
111199733

.
ath-u.5
for
AT2G25355

.
ath-u.5
for
AT4G32175

.
gma-u.5
for
100809941

.
gma-u.5
for
100791930

.
vvi-u.5
for
100241656

.
ppo-u.5
for
7458031

.
mtr-u.5
for
11422163

.
sly-u.5
for
101262526

.
osa-u.5
for
4324917

.
osa-u.5
for
4327851

.
zma-u.5
for
103651400

.
zma-u.5
for
100282437

.


Ortholog ID: 7514
Species ath ath gma gma sly osa osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G32175 AT2G25355 LOC100791930 LOC100809941 LOC101262526 LOC4324917 LOC4327851 LOC100282437 LOC103651400 LOC103834571 LOC100241656 LOC7458031 LOC11422163 LOC123078722 LOC123070275 LOC123444021 LOC107887158 LOC107933413 LOC111199733 LOC106390008 CHLRE_07g319900v5 LOC8061812 LOC102594990 LOC102617858 LOC100843769 LOC107780643 LOC107811937
Function* PNAS-3-like protein PNAS-3-like protein putative exosome complex component rrp40 putative exosome complex component rrp40-like uncharacterized LOC101262526 uncharacterized LOC4324917 uncharacterized LOC4327851 exosome complex exonuclease RRP40 putative exosome complex component rrp40 putative exosome complex component rrp40 uncharacterized LOC100241656 uncharacterized LOC7458031 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 putative exosome complex component rrp40 uncharacterized protein putative exosome complex component rrp40 putative exosome complex component rrp40 uncharacterized LOC102617858 putative exosome complex component rrp40 uncharacterized LOC107780643 uncharacterized LOC107811937
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath03008 Ribosome biogenesis in eukaryotes 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03020 RNA polymerase 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03010 Ribosome 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03008 Ribosome biogenesis in eukaryotes 3
cre03420 Nucleotide excision repair 3
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
sbi03018 RNA degradation 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 4
sot00260 Glycine, serine and threonine metabolism 2
sot00460 Cyanoamino acid metabolism 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
sot00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00902 Monoterpenoid biosynthesis 3
cit03018 RNA degradation 2
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829350 817074 100791930 100809941 101262526 4324917 4327851 100282437 103651400 103834571 100241656 7458031 11422163 123078722 123070275 123444021 107887158 107933413 111199733 106390008 5726388 8061812 102594990 102617858 100843769 107780643 107811937
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