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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106396388   26S proteasome regulatory subunit 10B homolog A 
 ath-u.5   RPT4A   regulatory particle triple-A ATPase 4A 
 ath-u.5   AT1G45000   AAA-type ATPase family protein 
 gma-u.5   100785863   26S proteasome regulatory subunit 10B homolog A 
 gma-u.5   100788475   26S proteasome regulatory subunit 10B homolog A 
 gma-u.5   100794489   26S proteasome regulatory subunit 10B homolog A 
 vvi-u.5   100243563   26S proteasome regulatory subunit S10B homolog B 
 vvi-u.5   100252341   26S proteasome regulatory subunit S10B homolog B 
 ppo-u.5   7477634   26S proteasome regulatory subunit S10B homolog B 
 ppo-u.5   7479720   26S proteasome regulatory subunit S10B homolog B 
 ppo-u.5   7470010   26S proteasome regulatory subunit S10B homolog B 
 mtr-u.5   11417253   26S proteasome regulatory subunit S10B homolog B 
 mtr-u.5   25490224   26S proteasome regulatory subunit 10B homolog A 
 sly-u.5   101259892   26S proteasome regulatory subunit 10B homolog A-like 
 sly-u.5   RPT4a   26S proteasomal subunit RPT4a 
 osa-u.5   4341487   26S proteasome regulatory subunit S10B homolog B 
 osa-u.5   4328642   26S proteasome regulatory subunit S10B homolog B 
 zma-u.5   100383510   26S protease regulatory subunit S10B homolog B 
 zma-u.5   100282100   26S protease regulatory subunit S10B 
 zma-u.5   100273945   26S proteasome regulatory subunit 10B homolog A 

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Top 50 coexpressed genes to 106396388 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106396388 (bna-r.1 coexpression data)

CoexMap"106396388"


bnaLOC106396388 | Entrez gene ID : 106396388    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 2 3 2 3 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03050 [list] [network] Proteasome (219 genes)
GO BP
GO:0045899 [list] [network] positive regulation of RNA polymerase II transcription preinitiation complex assembly  (10 genes)  IEA  
GO CC
GO:0031597 [list] [network] cytosolic proteasome complex  (10 genes)  IEA  
GO:0008540 [list] [network] proteasome regulatory particle, base subcomplex  (65 genes)  IEA  
GO MF
GO:0036402 [list] [network] proteasome-activating activity  (46 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (1360 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_013692216.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  cysk 1,  mito 1,  pero 1,  cysk_nucl 1,  cysk_plas 1  (predict for XP_013692216.2)
Subcellular
localization
TargetP
other 8  (predict for XP_013692216.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106396388

.
ath-u.5
for
RPT4A

.
ath-u.5
for
AT1G45000

.
gma-u.5
for
100785863

.
gma-u.5
for
100788475

.
gma-u.5
for
100794489

.
vvi-u.5
for
100243563

.
vvi-u.5
for
100252341

.
ppo-u.5
for
7477634

.
ppo-u.5
for
7479720

.
ppo-u.5
for
7470010

.
mtr-u.5
for
11417253

.
mtr-u.5
for
25490224

.
sly-u.5
for
101259892

.
sly-u.5
for
RPT4a

.
osa-u.5
for
4341487

.
osa-u.5
for
4328642

.
zma-u.5
for
100383510

.
zma-u.5
for
100282100

.
zma-u.5
for
100273945

.


Ortholog ID: 2584
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol RPT4A AT1G45000 LOC100794489 LOC100785863 RPT4a LOC101259892 LOC4328642 LOC4341487 LOC100383510 LOC100273945 LOC103828000 LOC103848574 LOC100243563 LOC100252341 LOC7456357 LOC7477634 LOC25490224 LOC11417253 LOC123158046 LOC123156808 LOC123402805 LOC123407431 LOC107887899 LOC107910205 LOC106415959 LOC106369687 CHLRE_17g710150v5 LOC8065084 LOC8082914 LOC102589500 LOC102626381 LOC100843882 LOC100835701 LOC107767815 LOC107783234
Function* regulatory particle triple-A ATPase 4A AAA-type ATPase family protein 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit 10B homolog A 26S proteasomal subunit RPT4a 26S proteasome regulatory subunit 10B homolog A-like 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S protease regulatory subunit S10B homolog B 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B-like 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit 10B homolog A 26S proteasome regulatory subunit 10B homolog A uncharacterized protein 26S protease regulatory subunit S10B homolog B 26S protease regulatory subunit S10B homolog B 26S protease regulatory subunit S10B homolog B-like 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B 26S proteasome regulatory subunit S10B homolog B-like 26S proteasome regulatory subunit S10B homolog B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 11
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 15
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
zma04141 Protein processing in endoplasmic reticulum 3
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 8
zma01200 Carbon metabolism 5
zma00020 Citrate cycle (TCA cycle) 4
zma00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 13
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 14
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo00190 Oxidative phosphorylation 2
ppo04142 Lysosome 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 9
mtr03083 Polycomb repressive complex 2
mtr03015 mRNA surveillance pathway 2
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 8
tae03050 Proteasome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 15
tae03420 Nucleotide excision repair 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 6
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00562 Inositol phosphate metabolism 3
ghi00340 Histidine metabolism 2
ghi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 5
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 6
sbi03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 11
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 6
bdi00190 Oxidative phosphorylation 4
bdi04145 Phagosome 4
bdi04141 Protein processing in endoplasmic reticulum 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 5
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 7
nta03082 ATP-dependent chromatin remodeling 3
nta00300 Lysine biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834316 841065 100794489 100785863 101268039 101259892 4328642 4341487 100383510 100273945 103828000 103848574 100243563 100252341 7456357 7477634 25490224 11417253 123158046 123156808 123402805 123407431 107887899 107910205 106415959 106369687 5717140 8065084 8082914 102589500 102626381 100843882 100835701 107767815 107783234
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