ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106396671	60S ribosomal protein L7-3
bna-r.1	111198762	60S ribosomal protein L7-2
bna-r.1	111215190	60S ribosomal protein L7-3-like
bna-r.1	106429206	60S ribosomal protein L7-3-like
bra-r.6	103866124	60S ribosomal protein L7-3
bra-r.6	103853221	60S ribosomal protein L7-1
ath-u.5	AT2G01250	Ribosomal protein L30/L7 family protein
ath-u.5	AT2G44120	Ribosomal protein L30/L7 family protein
ath-u.5	AT3G13580	Ribosomal protein L30/L7 family protein
ghi-r.1	107889272	60S ribosomal protein L7-4
ghi-r.1	107939261	60S ribosomal protein L7-1
ghi-r.1	107936208	60S ribosomal protein L7-1
cit-r.1	102611070	60S ribosomal protein L7-2
cit-r.1	102614577	60S ribosomal protein L7-4-like
cit-r.1	102629979	60S ribosomal protein L7-1
gma-u.5	100500005	ribosomal L30 N-terminal domain-containing protein
gma-u.5	100500011	60S ribosomal protein L7-4
gma-u.5	100306213	60S ribosomal protein L7-4
vvi-u.5	104880426	large ribosomal subunit protein uL30y
ppo-u.5	7497794	60S ribosomal protein L7-4
ppo-u.5	7487064	60S ribosomal protein L7-1
ppo-u.5	7478297	60S ribosomal protein L7-1
mtr-u.5	11410884	60S ribosomal protein L7-1
mtr-u.5	11440629	60S ribosomal protein L7-2
mtr-u.5	25482160	60S ribosomal protein L7-2
sly-u.5	101258378	large ribosomal subunit protein uL30y
sly-u.5	101251486	ribosomal protein L30/L7 family protein
sly-u.5	101260624	large ribosomal subunit protein uL30w
sot-r.1	102577695	putative 60S ribosomal protein L7-like protein
sot-r.1	102587452	60S ribosomal protein L7-4
sot-r.1	102594660	60S ribosomal protein L7-3
nta-r.1	107767555	large ribosomal subunit protein uL30w-like
nta-r.1	107764206	large ribosomal subunit protein uL30z
nta-r.1	107788971	large ribosomal subunit protein uL30z
osa-u.5	4336914	large ribosomal subunit protein uL30x
osa-u.5	4346195	large ribosomal subunit protein uL30z
osa-u.5	4345009	large ribosomal subunit protein uL30x
zma-u.5	100285130	60S ribosomal protein L7-like
zma-u.5	103637734	uncharacterized LOC103637734
zma-u.5	100281971	60S ribosomal protein L7-like
tae-r.2	123113810	60S ribosomal protein L7-2
tae-r.2	123046525	60S ribosomal protein L7-2
tae-r.2	123170310	60S ribosomal protein L7-2
hvu-r.1	123452832	60S ribosomal protein L7-3-like
hvu-r.1	123407350	60S ribosomal protein L7-1-like
hvu-r.1	123427688	60S ribosomal protein L7-2-like
sbi-r.1	8155608	60S ribosomal protein L7-3
sbi-r.1	110436942	60S ribosomal protein L7-3-like
sbi-r.1	110436898	60S ribosomal protein L7-3-like
bdi-r.1	100829357	60S ribosomal protein L7-2
bdi-r.1	100845883	60S ribosomal protein L7-2
bdi-r.1	100829822	60S ribosomal protein L7-2
cre-r.1	CHLRE_12g537800v5	uncharacterized protein

Top 50 coexpressed genes to 106396671 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106396671 (bna-r.1 coexpression data)

CoexMap"106396671"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03010 [list] [network] Ribosome (7497 genes)

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

(66 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit

(492 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome	(1340 genes)	IEA
GO:0003723 [list] [network] RNA binding	(3852 genes)	IEA

Protein

XP_013692588.1 [sequence] [blastp]
XP_013692589.1 [sequence] [blastp]
XP_048609322.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 1, mito 1, E.R. 1, cysk_nucl 1, nucl_plas 1	(predict for XP_013692588.1)
cyto 7, nucl 1, mito 1, E.R. 1, cysk_nucl 1, nucl_plas 1	(predict for XP_013692589.1)
cyto 7, nucl 1, mito 1, E.R. 1, cysk_nucl 1, nucl_plas 1	(predict for XP_048609322.1)

Subcellular
localization
TargetP

other 8	(predict for XP_013692588.1)
other 8	(predict for XP_013692589.1)
other 8	(predict for XP_048609322.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106396671	bna-r.1 for 111198762	bna-r.1 for 111215190	bna-r.1 for 106429206	bra-r.6 for 103866124	bra-r.6 for 103853221	ath-u.5 for AT2G01250	ath-u.5 for AT2G44120	ath-u.5 for AT3G13580	ghi-r.1 for 107889272	ghi-r.1 for 107939261	ghi-r.1 for 107936208	cit-r.1 for 102611070	cit-r.1 for 102614577	cit-r.1 for 102629979	gma-u.5 for 100500005	gma-u.5 for 100500011	gma-u.5 for 100306213	vvi-u.5 for 104880426	ppo-u.5 for 7497794	ppo-u.5 for 7487064	ppo-u.5 for 7478297	mtr-u.5 for 11410884	mtr-u.5 for 11440629	mtr-u.5 for 25482160	sly-u.5 for 101258378	sly-u.5 for 101251486	sly-u.5 for 101260624	sot-r.1 for 102577695	sot-r.1 for 102587452	sot-r.1 for 102594660	nta-r.1 for 107767555	nta-r.1 for 107764206	nta-r.1 for 107788971	osa-u.5 for 4336914	osa-u.5 for 4346195	osa-u.5 for 4345009	zma-u.5 for 100285130	zma-u.5 for 103637734	zma-u.5 for 100281971	tae-r.2 for 123113810	tae-r.2 for 123046525	tae-r.2 for 123170310	hvu-r.1 for 123452832	hvu-r.1 for 123407350	hvu-r.1 for 123427688	sbi-r.1 for 8155608	sbi-r.1 for 110436942	sbi-r.1 for 110436898	bdi-r.1 for 100829357	bdi-r.1 for 100845883	bdi-r.1 for 100829822	cre-r.1 for CHLRE_12g537800v5

Ortholog

Ortholog ID: 662

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

60S ribosomal protein L7-2

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2

60S ribosomal protein L7-3

60S ribosomal protein L7-2

Ribosomal protein L30/L7 family protein

60S ribosomal protein L7-2

60S ribosomal protein L7-4

60S ribosomal protein L7-2

60S ribosomal protein L7-4-like

60S ribosomal protein L7-1

ribosomal L30 N-terminal domain-containing protein

ribosomal protein L30/L7 family protein

60S ribosomal protein L7-4-like

large ribosomal subunit protein uL30y

60S ribosomal protein L7-4

60S ribosomal protein L7-1

60S ribosomal protein L7-3

60S ribosomal protein L7-1

60S ribosomal protein L7-2

60S ribosomal protein L7-4

large ribosomal subunit protein uL30w

large ribosomal subunit protein uL30z

large ribosomal subunit protein uL30x

putative 60S ribosomal protein L7-like protein

60S ribosomal protein L7-4

60S ribosomal protein L7-1

large ribosomal subunit protein uL30w-like

large ribosomal subunit protein uL30y-like

large ribosomal subunit protein uL30x

large ribosomal subunit protein uL30z

large ribosomal subunit protein uL30x

60S ribosomal protein L7-like

60S ribosomal protein L7-2

60S ribosomal protein L7-3-like

60S ribosomal protein L7-1-like

60S ribosomal protein L7-2-like

60S ribosomal protein L7-3

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	13
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03010	Ribosome	3
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	18
sly03008	Ribosome biogenesis in eukaryotes	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03040	Spliceosome	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	13
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2
tae03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	9
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03040	Spliceosome	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	20

Expression

Expression pattern

Entrez Gene ID^*

111198762

106429206

106436885

103866124

103839500

103827596

814652

819018

820560

107891468

107949068

107889153

102611070

102614577

102629979

100500005

100305682

100813342

104880426

100267028

100245039

7497794

7478297

7485495

11410884

25482160

25491242

101260624

101268852

101261844

102577695

102587452

102600208

107767555

107814165

107767309

4336914

4346195

4345009

100281971

100281870

100192863

123113810

123170310

123152152

123452832

123407350

123427688

8155608

110436942

110436898

100829357

100845883

100829822

5718458

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	3	3	1	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106396671 (bna-r.1 coexpression data)

Top 50 enrichment test to 106396671 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**