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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-r.7   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-m.9   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-e.2   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-m.4.bio   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-m.4.hor   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-m.4.lig   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-m.4.str   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-m.4.tis   AT3G13580   Ribosomal protein L30/L7 family protein 
 ath-u.5   AT2G01250   Ribosomal protein L30/L7 family protein 
 ath-u.5   AT2G44120   Ribosomal protein L30/L7 family protein 
 ath-u.5   AT1G80750   Ribosomal protein L30/L7 family protein 
 gma-u.5   100813342   60S ribosomal protein L7-4-like 
 gma-u.5   100305682   ribosomal protein L30/L7 family protein 
 gma-u.5   100306107   60S ribosomal protein L7 
 vvi-u.5   104880426   large ribosomal subunit protein uL30y 
 ppo-u.5   7478297   60S ribosomal protein L7-1 
 ppo-u.5   7484057   60S ribosomal protein L7-2 
 ppo-u.5   7469477   60S ribosomal protein L7-4 
 mtr-u.5   25491242   60S ribosomal protein L7-4 
 mtr-u.5   11410884   60S ribosomal protein L7-1 
 mtr-u.5   11440629   60S ribosomal protein L7-2 
 sly-u.5   101261844   large ribosomal subunit protein uL30x 
 sly-u.5   101268852   large ribosomal subunit protein uL30z 
 sly-u.5   101260624   large ribosomal subunit protein uL30w 
 osa-u.5   4346195   large ribosomal subunit protein uL30z 
 osa-u.5   4345009   large ribosomal subunit protein uL30x 
 osa-u.5   4336914   large ribosomal subunit protein uL30x 
 zma-u.5   100281870   60S ribosomal protein L7-like 
 zma-u.5   100281971   60S ribosomal protein L7-like 
 zma-u.5   100282330   60S ribosomal protein L7-like 

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Top 50 coexpressed genes to AT3G13580 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G13580 (ath-u.5 coexpression data)

CoexMap"820560"


athAT3G13580 | Entrez gene ID : 820560    
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 1 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (4 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (124 genes)  HDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_001326486.1 [sequence] [blastp]
NP_001326487.1 [sequence] [blastp]
NP_001326488.1 [sequence] [blastp]
NP_001326489.1 [sequence] [blastp]
NP_001326490.1 [sequence] [blastp]
NP_001326491.1 [sequence] [blastp]
NP_187967.1 [sequence] [blastp]
NP_974304.1 [sequence] [blastp]
NP_974305.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for NP_001326486.1)
cyto 8,  nucl 1  (predict for NP_001326487.1)
cyto 8,  nucl 1  (predict for NP_001326488.1)
cyto 8,  nucl 1  (predict for NP_001326489.1)
cyto 8,  nucl 1  (predict for NP_001326490.1)
cyto 8,  nucl 1  (predict for NP_001326491.1)
cyto 8,  nucl 1  (predict for NP_187967.1)
cyto 8,  nucl 1  (predict for NP_974304.1)
cyto 8,  nucl 1  (predict for NP_974305.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001326486.1)
other 9  (predict for NP_001326487.1)
other 9  (predict for NP_001326488.1)
other 9  (predict for NP_001326489.1)
other 9  (predict for NP_001326490.1)
other 9  (predict for NP_001326491.1)
other 9  (predict for NP_187967.1)
other 9  (predict for NP_974304.1)
other 9  (predict for NP_974305.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G13580
ath-r.7
for
AT3G13580
ath-m.9
for
AT3G13580
ath-e.2
for
AT3G13580
ath-m.4.bio
for
AT3G13580
ath-m.4.hor
for
AT3G13580
ath-m.4.lig
for
AT3G13580
ath-m.4.str
for
AT3G13580
ath-m.4.tis
for
AT3G13580
ath-u.5
for
AT2G01250
ath-u.5
for
AT2G44120
ath-u.5
for
AT1G80750
gma-u.5
for
100813342
gma-u.5
for
100305682
gma-u.5
for
100306107
vvi-u.5
for
104880426
ppo-u.5
for
7478297
ppo-u.5
for
7484057
ppo-u.5
for
7469477
mtr-u.5
for
25491242
mtr-u.5
for
11410884
mtr-u.5
for
11440629
sly-u.5
for
101261844
sly-u.5
for
101268852
sly-u.5
for
101260624
osa-u.5
for
4346195
osa-u.5
for
4345009
osa-u.5
for
4336914
zma-u.5
for
100281870
zma-u.5
for
100281971
zma-u.5
for
100282330


Ortholog ID: 662
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol AT2G01250 AT2G44120 LOC103839500 LOC103866124 LOC106436885 LOC106429206 LOC107889153 LOC107949068 LOC102614577 LOC102629979 LOC100305682 LOC100813342 LOC100267028 LOC104880426 LOC7478297 LOC7485495 LOC25491242 LOC25482160 LOC101261844 LOC101260624 LOC102600208 LOC102577695 LOC107767555 LOC107767309 LOC4336914 LOC4346195 LOC100281870 LOC100192863 LOC123170310 LOC123152152 LOC123427688 LOC123452832 LOC110436898 LOC110436942 LOC100845883 LOC100829822 CHLRE_12g537800v5
Function* Ribosomal protein L30/L7 family protein Ribosomal protein L30/L7 family protein 60S ribosomal protein L7-2 60S ribosomal protein L7-3 60S ribosomal protein L7-2 60S ribosomal protein L7-3-like 60S ribosomal protein L7-4 60S ribosomal protein L7-4 60S ribosomal protein L7-4-like 60S ribosomal protein L7-1 ribosomal protein L30/L7 family protein 60S ribosomal protein L7-4-like large ribosomal subunit protein uL30y large ribosomal subunit protein uL30y 60S ribosomal protein L7-1 60S ribosomal protein L7-3 60S ribosomal protein L7-4 60S ribosomal protein L7-2 large ribosomal subunit protein uL30x large ribosomal subunit protein uL30w 60S ribosomal protein L7-1 putative 60S ribosomal protein L7-like protein large ribosomal subunit protein uL30w-like large ribosomal subunit protein uL30y-like large ribosomal subunit protein uL30x large ribosomal subunit protein uL30z 60S ribosomal protein L7-like 60S ribosomal protein L7-like 60S ribosomal protein L7-2 60S ribosomal protein L7-2 60S ribosomal protein L7-2-like 60S ribosomal protein L7-3-like 60S ribosomal protein L7-3-like 60S ribosomal protein L7-3-like 60S ribosomal protein L7-2 60S ribosomal protein L7-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 18
sly03008 Ribosome biogenesis in eukaryotes 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03040 Spliceosome 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03040 Spliceosome 3
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 20
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814652 819018 103839500 103866124 106436885 106429206 107889153 107949068 102614577 102629979 100305682 100813342 100267028 104880426 7478297 7485495 25491242 25482160 101261844 101260624 102600208 102577695 107767555 107767309 4336914 4346195 100281870 100192863 123170310 123152152 123427688 123452832 110436898 110436942 100845883 100829822 5718458
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