ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101261844	large ribosomal subunit protein uL30x
sly-r.6	101261844	large ribosomal subunit protein uL30x
sly-m.5	101261844	large ribosomal subunit protein uL30x
sly-u.5	101251486	ribosomal protein L30/L7 family protein
sly-u.5	101268852	large ribosomal subunit protein uL30z
sly-u.5	101258378	large ribosomal subunit protein uL30y
sot-r.1	102600208	60S ribosomal protein L7-1
sot-r.1	102594660	60S ribosomal protein L7-3
sot-r.1	102587452	60S ribosomal protein L7-4
nta-r.1	107794124	large ribosomal subunit protein uL30y
nta-r.1	107826102	large ribosomal subunit protein uL30y-like
nta-r.1	107762110	large ribosomal subunit protein uL30z
ath-u.5	AT2G01250	Ribosomal protein L30/L7 family protein
ath-u.5	AT2G44120	Ribosomal protein L30/L7 family protein
ath-u.5	AT3G13580	Ribosomal protein L30/L7 family protein
gma-u.5	100500011	60S ribosomal protein L7-4
gma-u.5	100813342	60S ribosomal protein L7-4-like
gma-u.5	100305682	ribosomal protein L30/L7 family protein
bra-r.6	103866768	60S ribosomal protein L7-3
bra-r.6	103866124	60S ribosomal protein L7-3
vvi-u.5	104880426	large ribosomal subunit protein uL30y
ppo-u.5	7478297	60S ribosomal protein L7-1
ppo-u.5	7497794	60S ribosomal protein L7-4
ppo-u.5	7484057	60S ribosomal protein L7-2
mtr-u.5	11440629	60S ribosomal protein L7-2
mtr-u.5	25482160	60S ribosomal protein L7-2
mtr-u.5	25491242	60S ribosomal protein L7-4
ghi-r.1	107889272	60S ribosomal protein L7-4
ghi-r.1	107891468	60S ribosomal protein L7-2
ghi-r.1	107915136	60S ribosomal protein L7-1
bna-r.1	106353381	60S ribosomal protein L7-1
bna-r.1	106429206	60S ribosomal protein L7-3-like
bna-r.1	106402376	60S ribosomal protein L7-1
cit-r.1	102611070	60S ribosomal protein L7-2
cit-r.1	102629979	60S ribosomal protein L7-1
cit-r.1	102614577	60S ribosomal protein L7-4-like
osa-u.5	4346195	large ribosomal subunit protein uL30z
osa-u.5	4345009	large ribosomal subunit protein uL30x
osa-u.5	4336914	large ribosomal subunit protein uL30x
zma-u.5	100192863	60S ribosomal protein L7-like
zma-u.5	100281870	60S ribosomal protein L7-like
zma-u.5	100285130	60S ribosomal protein L7-like
tae-r.2	123170310	60S ribosomal protein L7-2
tae-r.2	123160802	60S ribosomal protein L7-2
tae-r.2	606394	60S ribosomal protein L7-2
hvu-r.1	123452832	60S ribosomal protein L7-3-like
hvu-r.1	123427688	60S ribosomal protein L7-2-like
hvu-r.1	123407350	60S ribosomal protein L7-1-like
sbi-r.1	110436898	60S ribosomal protein L7-3-like
sbi-r.1	8155608	60S ribosomal protein L7-3
sbi-r.1	8060904	60S ribosomal protein L7-2
bdi-r.1	100829357	60S ribosomal protein L7-2
bdi-r.1	100845883	60S ribosomal protein L7-2
bdi-r.1	100829822	60S ribosomal protein L7-2
cre-r.1	CHLRE_12g537800v5	uncharacterized protein

Top 50 coexpressed genes to 101261844 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101261844 (sly-u.5 coexpression data)

CoexMap"101261844"

[Cytoscape]

Annotation

functional annotation

KEGG

sly03010 [list] [network] Ribosome (6225 genes)

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

(21 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit

(140 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome	(342 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1208 genes)	IEA

Protein

XP_004246043.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, cysk 1, chlo 1, nucl 1, E.R. 1, cysk_plas 1

(predict for XP_004246043.1)

Subcellular
localization
TargetP

other 9

(predict for XP_004246043.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101261844	sly-r.6 for 101261844	sly-m.5 for 101261844	sly-u.5 for 101251486	sly-u.5 for 101268852	sly-u.5 for 101258378	sot-r.1 for 102600208	sot-r.1 for 102594660	sot-r.1 for 102587452	nta-r.1 for 107794124	nta-r.1 for 107826102	nta-r.1 for 107762110	ath-u.5 for AT2G01250	ath-u.5 for AT2G44120	ath-u.5 for AT3G13580	gma-u.5 for 100500011	gma-u.5 for 100813342	gma-u.5 for 100305682	bra-r.6 for 103866768	bra-r.6 for 103866124	vvi-u.5 for 104880426	ppo-u.5 for 7478297	ppo-u.5 for 7497794	ppo-u.5 for 7484057	mtr-u.5 for 11440629	mtr-u.5 for 25482160	mtr-u.5 for 25491242	ghi-r.1 for 107889272	ghi-r.1 for 107891468	ghi-r.1 for 107915136	bna-r.1 for 106353381	bna-r.1 for 106429206	bna-r.1 for 106402376	cit-r.1 for 102611070	cit-r.1 for 102629979	cit-r.1 for 102614577	osa-u.5 for 4346195	osa-u.5 for 4345009	osa-u.5 for 4336914	zma-u.5 for 100192863	zma-u.5 for 100281870	zma-u.5 for 100285130	tae-r.2 for 123170310	tae-r.2 for 123160802	tae-r.2 for 606394	hvu-r.1 for 123452832	hvu-r.1 for 123427688	hvu-r.1 for 123407350	sbi-r.1 for 110436898	sbi-r.1 for 8155608	sbi-r.1 for 8060904	bdi-r.1 for 100829357	bdi-r.1 for 100845883	bdi-r.1 for 100829822	cre-r.1 for CHLRE_12g537800v5

Ortholog

Ortholog ID: 662

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

large ribosomal subunit protein uL30x

large ribosomal subunit protein uL30z

large ribosomal subunit protein uL30w

60S ribosomal protein L7-1

60S ribosomal protein L7-4

putative 60S ribosomal protein L7-like protein

large ribosomal subunit protein uL30y-like

large ribosomal subunit protein uL30w-like

Ribosomal protein L30/L7 family protein

60S ribosomal protein L7-4-like

ribosomal protein L30/L7 family protein

ribosomal L30 N-terminal domain-containing protein

60S ribosomal protein L7-3

60S ribosomal protein L7-2

large ribosomal subunit protein uL30y

60S ribosomal protein L7-1

60S ribosomal protein L7-4

60S ribosomal protein L7-3

60S ribosomal protein L7-2

60S ribosomal protein L7-4

60S ribosomal protein L7-1

60S ribosomal protein L7-2

60S ribosomal protein L7-4

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2

60S ribosomal protein L7-1

60S ribosomal protein L7-4-like

large ribosomal subunit protein uL30z

large ribosomal subunit protein uL30x

60S ribosomal protein L7-like

60S ribosomal protein L7-2

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2-like

60S ribosomal protein L7-1-like

60S ribosomal protein L7-3-like

60S ribosomal protein L7-3

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2

uncharacterized protein

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	18
sly03008	Ribosome biogenesis in eukaryotes	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03010	Ribosome	3
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03040	Spliceosome	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	13
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	13
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2
tae03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	9
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03040	Spliceosome	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	20

Expression

Expression pattern

Entrez Gene ID^*

101261844

101268852

101260624

102600208

102587452

102577695

107767309

107814165

107767555

814652

819018

820560

100813342

100305682

100500005

103866124

103839500

103827596

104880426

100245039

100267028

7478297

7497794

7485495

25482160

25491242

11410884

107891468

107949068

107889153

106429206

111198762

106436885

102611070

102629979

102614577

4346195

4345009

4336914

100192863

100281870

100281971

123170310

123152152

123113810

123452832

123427688

123407350

110436898

8155608

110436942

100829357

100845883

100829822

5718458

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	3	2	1	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101261844 (sly-u.5 coexpression data)

Top 50 enrichment test to 101261844 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**