ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106396974	ADP-ribosylation factor 1-like
ath-u.5	ARFA1D	Ras-related small GTP-binding family protein
ath-u.5	ARF1	ADP-ribosylation factor 1
gma-u.5	100789436	ADP-ribosylation factor 2-B
gma-u.5	100796123	ADP-ribosylation factor 2
gma-u.5	100797931	ADP-ribosylation factor
vvi-u.5	100267487	ADP-ribosylation factor
vvi-u.5	100249066	ADP-ribosylation factor 1
vvi-u.5	100243082	ADP-ribosylation factor 2
ppo-u.5	7481423	ADP-ribosylation factor
ppo-u.5	7495198	ADP-ribosylation factor
ppo-u.5	7498230	ADP-ribosylation factor 1
mtr-u.5	11406279	ADP-ribosylation factor 2
mtr-u.5	11408220	ADP-ribosylation factor
mtr-u.5	11416588	ADP-ribosylation factor 2
sly-u.5	101260126	ADP-ribosylation factor 1
sly-u.5	101250243	ADP-ribosylation factor 2
sly-u.5	101249410	ADP-ribosylation factor 1
osa-u.5	4339157	ADP-ribosylation factor 2-like
osa-u.5	4342746	ADP-ribosylation factor 1
osa-u.5	4334545	ADP-ribosylation factor 1-like
zma-u.5	732812	ADP-ribosylation factor homolog 1
zma-u.5	100384428	uncharacterized LOC100384428
zma-u.5	100382775	ADP-ribosylation factor A1F

Top 50 coexpressed genes to 106396974 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106396974 (bna-r.1 coexpression data)

CoexMap"106396974"

[Cytoscape]

Annotation

functional annotation

KEGG

bna04144 [list] [network] Endocytosis (511 genes)

GO BP

GO:0006886 [list] [network] intracellular protein transport	(894 genes)	IEA
GO:0016192 [list] [network] vesicle-mediated transport	(1457 genes)	IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(16489 genes)

IEA

GO MF

GO:0003924 [list] [network] GTPase activity	(685 genes)	IEA
GO:0005525 [list] [network] GTP binding	(777 genes)	IEA

Protein

XP_013692945.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cyto_E.R. 3, pero 3, cyto_nucl 2, E.R. 1

(predict for XP_013692945.1)

Subcellular
localization
TargetP

scret 5, other 5

(predict for XP_013692945.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106396974	ath-u.5 for ARFA1D	ath-u.5 for ARF1	gma-u.5 for 100789436	gma-u.5 for 100796123	gma-u.5 for 100797931	vvi-u.5 for 100267487	vvi-u.5 for 100249066	vvi-u.5 for 100243082	ppo-u.5 for 7481423	ppo-u.5 for 7495198	ppo-u.5 for 7498230	mtr-u.5 for 11406279	mtr-u.5 for 11408220	mtr-u.5 for 11416588	sly-u.5 for 101260126	sly-u.5 for 101250243	sly-u.5 for 101249410	osa-u.5 for 4339157	osa-u.5 for 4342746	osa-u.5 for 4334545	zma-u.5 for 732812	zma-u.5 for 100384428	zma-u.5 for 100382775

Ortholog

Ortholog ID: 281

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

ARF1

ARFA1E

Function^*

ADP-ribosylation factor 2-B

ADP-ribosylation factor 2

ADP-ribosylation factor 1

ADP-ribosylation factor A1E

ADP-ribosylation factor 2

ADP-ribosylation factor

ADP-ribosylation factor-like

ADP-ribosylation factor

uncharacterized LOC100306021

ADP-ribosylation factor

ADP-ribosylation factor-like

ADP-ribosylation factor

ADP-ribosylation factor 2

ADP-ribosylation factor 2-B-like

ADP-ribosylation factor 1-like protein

ADP-ribosylation factor 1-like

ADP-ribosylation factor

ADP-ribosylation factor 2-like

ADP-ribosylation factor 1-like

uncharacterized LOC100216623

ADP-ribosylation factor 1

ADP-ribosylation factor

ADP-ribosylation factor 1

ADP-ribosylation factor 2

ADP-ribosylation factor 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	7
bna04130	SNARE interactions in vesicular transport	2
bna00190	Oxidative phosphorylation	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	10
bna04142	Lysosome	7
bna00190	Oxidative phosphorylation	5
bna04145	Phagosome	5
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	4
bra01250	Biosynthesis of nucleotide sugars	4
bra04144	Endocytosis	3
bra03060	Protein export	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04075	Plant hormone signal transduction	3
ath04626	Plant-pathogen interaction	3
ath04120	Ubiquitin mediated proteolysis	2
ath04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	4
ath03083	Polycomb repressive complex	3
ath04141	Protein processing in endoplasmic reticulum	3
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	7
ghi04130	SNARE interactions in vesicular transport	3
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	7
ghi04130	SNARE interactions in vesicular transport	3
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04145	Phagosome	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	4
gma04145	Phagosome	4
gma04144	Endocytosis	3
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	6
gma04016	MAPK signaling pathway - plant	4
gma04070	Phosphatidylinositol signaling system	4
gma04075	Plant hormone signal transduction	4
gma04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	5
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	6
ppo00190	Oxidative phosphorylation	4
ppo04142	Lysosome	4
ppo04145	Phagosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04626	Plant-pathogen interaction	4
mtr04144	Endocytosis	3
mtr04016	MAPK signaling pathway - plant	3
mtr04070	Phosphatidylinositol signaling system	3
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4
mtr03050	Proteasome	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr04626	Plant-pathogen interaction	2
mtr03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2
sly04120	Ubiquitin mediated proteolysis	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	8
nta03083	Polycomb repressive complex	5
nta04141	Protein processing in endoplasmic reticulum	5
nta04144	Endocytosis	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	8
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04145	Phagosome	2
osa04517	IgSF CAM signaling	2
osa04814	Motor proteins	2
osa01240	Biosynthesis of cofactors	2
osa00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04136	Autophagy - other	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	5
zma04517	IgSF CAM signaling	5
zma04814	Motor proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00750	Vitamin B6 metabolism	6
tae01240	Biosynthesis of cofactors	6
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	6
tae04130	SNARE interactions in vesicular transport	6
tae04145	Phagosome	5
tae03060	Protein export	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	9
sbi00020	Citrate cycle (TCA cycle)	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	6
bdi04016	MAPK signaling pathway - plant	2
bdi04070	Phosphatidylinositol signaling system	2
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	5
bdi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	4
cre04144	Endocytosis	4
cre04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	4
cre04145	Phagosome	4
cre00190	Oxidative phosphorylation	3
cre04142	Lysosome	3

Expression

Expression pattern

Entrez Gene ID^*

106406661

106372109

103843841

103862786

838957

825402

107960335

107916562

102623489

102607656

100781846

100306021

100242458

100245580

7465227

7495198

11416588

25494605

101246230

101248063

102604565

102577686

107813708

107781720

4326208

4327591

100216623

103627567

123120421

123105601

123452946

123426117

8085833

100825133

100825440

5717073

5716623

The preparation time of this page was 0.2 [sec].


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106396974 (bna-r.1 coexpression data)

Top 50 enrichment test to 106396974 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**