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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106399822   chlorophyll a-b binding protein CP29.2, chloroplastic 
 bna-r.1   106401014   chlorophyll a-b binding protein CP29.3, chloroplastic-like 
 bna-r.1   111206508   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 bna-r.1   106435455   chlorophyll a-b binding protein CP29.1, chloroplastic 
 bra-r.6   103850412   chlorophyll a-b binding protein CP29.1, chloroplastic 
 bra-r.6   103866983   chlorophyll a-b binding protein CP29.3, chloroplastic 
 bra-r.6   103870577   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ath-u.5   LHCB4.3   light harvesting complex photosystem II 
 ath-u.5   LHCB4.2   light harvesting complex photosystem II 
 ath-u.5   LHCB4.1   light harvesting complex photosystem II 
 ghi-r.1   107958067   chlorophyll a-b binding protein CP29.1, chloroplastic 
 ghi-r.1   107962051   chlorophyll a-b binding protein CP29.3, chloroplastic 
 ghi-r.1   107931745   chlorophyll a-b binding protein CP29.3, chloroplastic 
 cit-r.1   102627462   chlorophyll a-b binding protein CP29.1, chloroplastic 
 cit-r.1   102577995   chlorophyll a-b binding protein CP29.3, chloroplastic 
 gma-u.5   100785180   chlorophyll a-b binding protein CP29.2, chloroplastic 
 gma-u.5   100785415   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 gma-u.5   100794604   chlorophyll a-b binding protein CP29.3, chloroplastic 
 vvi-u.5   100266604   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 ppo-u.5   7466067   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.5   7487313   chlorophyll a-b binding protein CP29.2, chloroplastic 
 ppo-u.5   7488015   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-u.5   11406674   chlorophyll a-b binding protein CP29.3, chloroplastic 
 mtr-u.5   11422473   chlorophyll a-b binding protein CP29.1, chloroplastic 
 sly-u.5   101249002   chlorophyll a-b binding protein CP29.1, chloroplastic 
 sot-r.1   102583949   chlorophyll a-b binding protein CP29.1, chloroplastic-like 
 nta-r.1   107798677   chlorophyll a-b binding protein CP29.2, chloroplastic 
 nta-r.1   107774251   chlorophyll a-b binding protein CP29.1, chloroplastic-like 
 osa-u.5   4343583   chlorophyll a-b binding protein CP29.1, chloroplastic 
 zma-u.5   542478   photosystem II subunit29 
 zma-u.5   100216729   Chlorophyll a-b binding protein CP29.1 chloroplastic 
 tae-r.2   123044554   chlorophyll a-b binding protein CP29.2, chloroplastic 
 tae-r.2   123188273   chlorophyll a-b binding protein CP29.2, chloroplastic 
 tae-r.2   123052387   chlorophyll a-b binding protein CP29.2, chloroplastic 
 hvu-r.1   123425713   chlorophyll a-b binding protein CP29.2, chloroplastic-like 
 sbi-r.1   8081744   chlorophyll a-b binding protein CP29.2, chloroplastic 
 bdi-r.1   100834994   chlorophyll a-b binding protein CP29.2, chloroplastic 
 cre-r.1   CHLRE_17g720250v5   uncharacterized protein 

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Top 50 coexpressed genes to 106399822 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106399822 (bna-r.1 coexpression data)

CoexMap"106399822"


bnaLOC106399822 | Entrez gene ID : 106399822    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 1 3 2 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00196 [list] [network] Photosynthesis - antenna proteins (65 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (68 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (379 genes)  IEA  
GO CC
GO:0010287 [list] [network] plastoglobule  (48 genes)  IEA  
GO:0009941 [list] [network] chloroplast envelope  (300 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (359 genes)  IEA  
GO MF
Protein XP_013695726.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  vacu 1,  nucl 1,  mito 1,  extr 1,  E.R._vacu 1  (predict for XP_013695726.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013695726.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106399822
bna-r.1
for
106401014
bna-r.1
for
111206508
bna-r.1
for
106435455
bra-r.6
for
103850412
bra-r.6
for
103866983
bra-r.6
for
103870577
ath-u.5
for
LHCB4.3
ath-u.5
for
LHCB4.2
ath-u.5
for
LHCB4.1
ghi-r.1
for
107958067
ghi-r.1
for
107962051
ghi-r.1
for
107931745
cit-r.1
for
102627462
cit-r.1
for
102577995
gma-u.5
for
100785180
gma-u.5
for
100785415
gma-u.5
for
100794604
vvi-u.5
for
100266604
ppo-u.5
for
7466067
ppo-u.5
for
7487313
ppo-u.5
for
7488015
mtr-u.5
for
11406674
mtr-u.5
for
11422473
sly-u.5
for
101249002
sot-r.1
for
102583949
nta-r.1
for
107798677
nta-r.1
for
107774251
osa-u.5
for
4343583
zma-u.5
for
542478
zma-u.5
for
100216729
tae-r.2
for
123044554
tae-r.2
for
123188273
tae-r.2
for
123052387
hvu-r.1
for
123425713
sbi-r.1
for
8081744
bdi-r.1
for
100834994
cre-r.1
for
CHLRE_17g720250v5


Ortholog ID: 4362
Species bna bna bna bra bra bra ath ath ath ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106399822 LOC111206508 LOC106435455 LOC103850412 LOC103866983 LOC103870577 LHCB4.3 LHCB4.2 LHCB4.1 LOC107958067 LOC107931745 LOC107891546 LOC102627462 LOC102577995 LOC100785180 LOC100785415 LOC100820335 LOC100266604 LOC7466067 LOC7487313 LOC7488015 LOC11406674 LOC11422473 LOC101249002 LOC102583949 LOC107798677 LOC107774251 LOC4343583 LOC542478 LOC100216729 LOC123044554 LOC123188273 LOC123052387 LOC123425713 LOC8081744 LOC100834994 CHLRE_17g720250v5
Function* chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic light harvesting complex photosystem II light harvesting complex photosystem II light harvesting complex photosystem II chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.3, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.1, chloroplastic-like chlorophyll a-b binding protein CP29.1, chloroplastic photosystem II subunit29 Chlorophyll a-b binding protein CP29.1 chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic-like chlorophyll a-b binding protein CP29.2, chloroplastic chlorophyll a-b binding protein CP29.2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00196 Photosynthesis - antenna proteins 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 9
bra00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 6
bra01200 Carbon metabolism 6
bra00195 Photosynthesis 5
bra00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00196 Photosynthesis - antenna proteins 9
bra00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 6
ath00710 Carbon fixation by Calvin cycle 4
ath00630 Glyoxylate and dicarboxylate metabolism 4
ath00260 Glycine, serine and threonine metabolism 2
ath00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 10
ath00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 9
ath00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 10
ghi00196 Photosynthesis - antenna proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00196 Photosynthesis - antenna proteins 8
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00196 Photosynthesis - antenna proteins 6
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 9
gma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00196 Photosynthesis - antenna proteins 13
gma00195 Photosynthesis 3
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 5
gma01200 Carbon metabolism 4
gma00710 Carbon fixation by Calvin cycle 3
gma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00196 Photosynthesis - antenna proteins 10
vvi00195 Photosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 9
ppo00196 Photosynthesis - antenna proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 7
ppo00195 Photosynthesis 4
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 5
ppo01200 Carbon metabolism 5
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 10
mtr00710 Carbon fixation by Calvin cycle 7
mtr00010 Glycolysis / Gluconeogenesis 4
mtr00030 Pentose phosphate pathway 4
mtr00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 9
mtr00196 Photosynthesis - antenna proteins 6
mtr00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 11
sly00196 Photosynthesis - antenna proteins 5
sly00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 14
sot00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 14
nta00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 10
osa00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 13
zma00195 Photosynthesis 4
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 11
zma00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 14
tae00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 10
tae00195 Photosynthesis 8
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 14
tae00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00196 Photosynthesis - antenna proteins 10
hvu00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 12
sbi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 9
bdi00196 Photosynthesis - antenna proteins 9
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 5
cre00196 Photosynthesis - antenna proteins 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106399822 111206508 106435455 103850412 103866983 103870577 818599 820043 830325 107958067 107931745 107891546 102627462 102577995 100785180 100785415 100820335 100266604 7466067 7487313 7488015 11406674 11422473 101249002 102583949 107798677 107774251 4343583 542478 100216729 123044554 123188273 123052387 123425713 8081744 100834994 5722671
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