ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106403323	mediator of RNA polymerase II transcription subunit 15a-like
ath-u.5	NRB4	mediator of RNA polymerase II transcription subunit 15a-like protein
gma-u.5	100805336	mediator of RNA polymerase II transcription subunit 15a
gma-u.5	100783762	mediator of RNA polymerase II transcription subunit 15a
gma-u.5	100782132	mediator of RNA polymerase II transcription subunit 15a
vvi-u.5	100264243	mediator of RNA polymerase II transcription subunit 15a
ppo-u.5	7470541	mediator of RNA polymerase II transcription subunit 15a
ppo-u.5	18096675	mediator of RNA polymerase II transcription subunit 15a
mtr-u.5	11430217	mediator of RNA polymerase II transcription subunit 15a
mtr-u.5	11442044	mediator of RNA polymerase II transcription subunit 15a
sly-u.5	101257852	mediator of RNA polymerase II transcription subunit 15a
osa-u.5	4346348	mediator of RNA polymerase II transcription subunit 15a
zma-u.5	103643172	mediator of RNA polymerase II transcription subunit 15a
zma-u.5	100383729	uncharacterized LOC100383729

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(5322 genes)

IEA

GO CC

GO MF

GO:0003713 [list] [network] transcription coactivator activity	(127 genes)	IEA
GO:0031490 [list] [network] chromatin DNA binding	(130 genes)	IEA

Protein

XP_048622368.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_048622368.1)

Subcellular
localization
TargetP

other 8

(predict for XP_048622368.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106403323	ath-u.5 for NRB4	gma-u.5 for 100805336	gma-u.5 for 100783762	gma-u.5 for 100782132	vvi-u.5 for 100264243	ppo-u.5 for 7470541	ppo-u.5 for 18096675	mtr-u.5 for 11430217	mtr-u.5 for 11442044	sly-u.5 for 101257852	osa-u.5 for 4346348	zma-u.5 for 103643172	zma-u.5 for 100383729

Ortholog

Ortholog ID: 3391

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NRB4

Function^*

mediator of RNA polymerase II transcription subunit 15a

mediator of RNA polymerase II transcription subunit 15a-like protein

mediator of RNA polymerase II transcription subunit 15a

uncharacterized LOC100383729

mediator of RNA polymerase II transcription subunit 15a

mediator of RNA polymerase II transcription subunit 15a-like

mediator of RNA polymerase II transcription subunit 15a

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	6
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00561	Glycerolipid metabolism	2
gma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03083	Polycomb repressive complex	2
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	3
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta04144	Endocytosis	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	5
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	5
bdi03083	Polycomb repressive complex	2
bdi03250	Viral life cycle - HIV-1	2

Expression

Expression pattern

Entrez Gene ID^*

106367074

106387568

103842885

103872366

838147

107906442

107958434

102616712

100782132

100792913

100264243

18096675

11430217

11442044

101257852

102602431

107772171

107773992

4346348

103643172

100383729

123165184

123154180

123407450

123411893

8054823

100840942

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106403323 (bna-r.1 coexpression data)

Top 50 enrichment test to 106403323 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	1	3	1	2	2	1	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106403323 (bna-r.1 coexpression data)

Top 50 enrichment test to 106403323 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**