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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106405802   serine/arginine repetitive matrix protein 1 
 ath-u.5   AT2G29210   splicing factor PWI domain-containing protein 
 gma-u.5   100810238   serine/arginine repetitive matrix protein 1 
 gma-u.5   100790051   serine/arginine repetitive matrix protein 1 
 vvi-u.5   100246732   uncharacterized LOC100246732 
 ppo-u.5   7468613   uncharacterized LOC7468613 
 ppo-u.5   7485685   uncharacterized LOC7485685 
 mtr-u.5   11427645   serine/arginine repetitive matrix protein 1 
 sly-u.5   101263053   uncharacterized LOC101263053 
 osa-u.5   4332383   uncharacterized LOC4332383 
 zma-u.5   100304415   splicing factor PWI domain-containing protein 

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Top 50 coexpressed genes to 106405802 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106405802 (bna-r.1 coexpression data)

CoexMap"106405802"


bnaLOC106405802 | Entrez gene ID : 106405802    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03013 [list] [network] Nucleocytoplasmic transport (328 genes)
bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO:0048024 [list] [network] regulation of mRNA splicing, via spliceosome  (76 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (684 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (506 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013701805.1 [sequence] [blastp]
XP_022569425.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_013701805.1)
nucl 9  (predict for XP_022569425.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013701805.1)
other 7  (predict for XP_022569425.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106405802

.
ath-u.5
for
AT2G29210

.
gma-u.5
for
100810238

.
gma-u.5
for
100790051

.
vvi-u.5
for
100246732

.
ppo-u.5
for
7468613

.
ppo-u.5
for
7485685

.
mtr-u.5
for
11427645

.
sly-u.5
for
101263053

.
osa-u.5
for
4332383

.
zma-u.5
for
100304415

.


Ortholog ID: 8894
Species ath gma gma sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G29210 LOC100790051 LOC100810238 LOC101263053 LOC4332383 LOC100304415 LOC103868054 LOC100246732 LOC7468613 LOC7485685 LOC11427645 LOC123097929 LOC123085420 LOC123449038 LOC107942448 LOC107934350 LOC106436179 LOC106405802 CHLRE_16g678050v5 LOC110436881 LOC102596503 LOC102608178 LOC100836380 LOC107818409 LOC107787198
Function* splicing factor PWI domain-containing protein serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 uncharacterized LOC101263053 uncharacterized LOC4332383 splicing factor PWI domain-containing protein serine/arginine repetitive matrix protein 1 uncharacterized LOC100246732 uncharacterized LOC7468613 uncharacterized LOC7485685 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 uncharacterized protein serine/arginine repetitive matrix protein 1 serine/arginine repetitive matrix protein 1 uncharacterized LOC102608178 serine/arginine repetitive matrix protein 1 uncharacterized LOC107818409 uncharacterized LOC107787198
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 4
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03015 mRNA surveillance pathway 2
bra03013 Nucleocytoplasmic transport 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 3
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03015 mRNA surveillance pathway 3
sbi03250 Viral life cycle - HIV-1 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817470 100790051 100810238 101263053 4332383 100304415 103868054 100246732 7468613 7485685 11427645 123097929 123085420 123449038 107942448 107934350 106436179 106405802 5721513 110436881 102596503 102608178 100836380 107818409 107787198
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