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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106406385   factor of DNA methylation 5-like 
 ath-u.5   IDN2   XH/XS domain-containing protein 
 ath-u.5   FDM2   XH/XS domain-containing protein 
 gma-u.5   100790829   factor of DNA methylation 1 
 gma-u.5   100798940   factor of DNA methylation 1 
 gma-u.5   102665742   kinesin-like protein KIF20B 
 vvi-u.5   100260350   protein INVOLVED IN DE NOVO 2 
 vvi-u.5   100257549   factor of DNA methylation 1 
 vvi-u.5   100252420   factor of DNA methylation 1 
 ppo-u.5   7458138   protein INVOLVED IN DE NOVO 2 
 ppo-u.5   18102687   factor of DNA methylation 4 
 ppo-u.5   7478299   factor of DNA methylation 1 
 mtr-u.5   11440090   factor of DNA methylation 1 
 mtr-u.5   11425283   factor of DNA methylation 1 
 mtr-u.5   25489298   protein INVOLVED IN DE NOVO 2 
 sly-u.5   101256002   protein INVOLVED IN DE NOVO 2 
 sly-u.5   101244470   factor of DNA methylation 1 
 osa-u.5   4329065   factor of DNA methylation 1 
 osa-u.5   4326595   protein INVOLVED IN DE NOVO 2 
 osa-u.5   4325982   protein INVOLVED IN DE NOVO 2 
 zma-u.5   100383007   putative XH domain family protein 
 zma-u.5   100279850   uncharacterized LOC100279850 
 zma-u.5   100382110   putative XH domain family protein 

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Top 50 coexpressed genes to 106406385 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106406385 (bna-r.1 coexpression data)

CoexMap"106406385"


bnaLOC106406385 | Entrez gene ID : 106406385    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 2 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (52 genes)  IEA  
GO CC
GO MF
Protein XP_013702486.2 [sequence] [blastp]
XP_013702487.2 [sequence] [blastp]
XP_013702488.2 [sequence] [blastp]
XP_013702489.2 [sequence] [blastp]
XP_013702490.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  cyto 2  (predict for XP_013702486.2)
nucl 6,  cyto_nucl 4,  cyto 2  (predict for XP_013702487.2)
nucl 6,  cyto_nucl 4,  cyto 2  (predict for XP_013702488.2)
nucl 6,  cyto_nucl 4,  cyto 2  (predict for XP_013702489.2)
nucl 6,  cyto_nucl 4,  cyto 2  (predict for XP_013702490.2)
Subcellular
localization
TargetP
other 9  (predict for XP_013702486.2)
other 9  (predict for XP_013702487.2)
other 9  (predict for XP_013702488.2)
other 9  (predict for XP_013702489.2)
other 9  (predict for XP_013702490.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106406385

.
ath-u.5
for
IDN2

.
ath-u.5
for
FDM2

.
gma-u.5
for
100790829

.
gma-u.5
for
100798940

.
gma-u.5
for
102665742

.
vvi-u.5
for
100260350

.
vvi-u.5
for
100257549

.
vvi-u.5
for
100252420

.
ppo-u.5
for
7458138

.
ppo-u.5
for
18102687

.
ppo-u.5
for
7478299

.
mtr-u.5
for
11440090

.
mtr-u.5
for
11425283

.
mtr-u.5
for
25489298

.
sly-u.5
for
101256002

.
sly-u.5
for
101244470

.
osa-u.5
for
4329065

.
osa-u.5
for
4326595

.
osa-u.5
for
4325982

.
zma-u.5
for
100383007

.
zma-u.5
for
100279850

.
zma-u.5
for
100382110

.


Ortholog ID: 752
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu hvu ghi ghi bna bna sbi sot sot cit cit bdi bdi nta nta
Symbol FDM1 FDM2 LOC102665742 LOC100790829 LOC101244470 LOC4325982 LOC4329065 LOC100383007 LOC100279850 LOC103842874 LOC103873124 LOC100252420 LOC100257549 LOC7478299 LOC7458138 LOC11425283 LOC25487893 LOC123061513 LOC123443878 LOC123413430 LOC107942441 LOC107900468 LOC106414893 LOC106346801 LOC8070401 LOC102599221 LOC102585012 LOC102629124 LOC102620954 LOC100845608 LOC100845391 LOC107806269 LOC107818569
Function* XH/XS domain-containing protein XH/XS domain-containing protein kinesin-like protein KIF20B factor of DNA methylation 1 factor of DNA methylation 1 protein INVOLVED IN DE NOVO 2 factor of DNA methylation 1 putative XH domain family protein uncharacterized LOC100279850 factor of DNA methylation 1-like protein INVOLVED IN DE NOVO 2 factor of DNA methylation 1 factor of DNA methylation 1 factor of DNA methylation 1 protein INVOLVED IN DE NOVO 2 factor of DNA methylation 1 factor of DNA methylation 4 factor of DNA methylation 1 factor of DNA methylation 1-like protein INVOLVED IN DE NOVO 2-like factor of DNA methylation 4 protein INVOLVED IN DE NOVO 2 factor of DNA methylation 1 factor of DNA methylation 1-like factor of DNA methylation 1 factor of DNA methylation 1-like protein INVOLVED IN DE NOVO 2 factor of DNA methylation 1 factor of DNA methylation 4 factor of DNA methylation 1 factor of DNA methylation 1 factor of DNA methylation 1 factor of DNA methylation 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03008 Ribosome biogenesis in eukaryotes 2
osa03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00380 Tryptophan metabolism 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
nta00052 Galactose metabolism 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838161 828016 102665742 100790829 101244470 4325982 4329065 100383007 100279850 103842874 103873124 100252420 100257549 7478299 7458138 11425283 25487893 123061513 123443878 123413430 107942441 107900468 106414893 106346801 8070401 102599221 102585012 102629124 102620954 100845608 100845391 107806269 107818569
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