Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106409313   DNA-directed RNA polymerases II, IV and V subunit 3 
 bna-r.1   106450001   DNA-directed RNA polymerases II, IV and V subunit 3-like 
 bna-r.1   106445647   DNA-directed RNA polymerases II, IV and V subunit 3 
 bna-r.1   106371538   DNA-directed RNA polymerases II, IV and V subunit 3 
 bra-r.6   103847993   DNA-directed RNA polymerases II, IV and V subunit 3 
 bra-r.6   103844364   DNA-directed RNA polymerases II, IV and V subunit 3 
 ath-u.5   NRPE3B   DNA-directed RNA polymerase family protein 
 ath-u.5   NRPB3   DNA-directed RNA polymerase family protein 
 ghi-r.1   107922611   DNA-directed RNA polymerases II, IV and V subunit 3 
 ghi-r.1   107945141   DNA-directed RNA polymerases II, IV and V subunit 3 
 ghi-r.1   107953379   DNA-directed RNA polymerases II, IV and V subunit 3 
 cit-r.1   102612811   DNA-directed RNA polymerases II, IV and V subunit 3 
 gma-u.5   100792565   DNA-directed RNA polymerases II, IV and V subunit 3 
 gma-u.5   100779047   DNA-directed RNA polymerases II, IV and V subunit 3 
 vvi-u.5   100258926   DNA-directed RNA polymerases II, IV and V subunit 3 
 ppo-u.5   7490057   DNA-directed RNA polymerases II, IV and V subunit 3 
 mtr-u.5   11444055   DNA-directed RNA polymerases II, IV and V subunit 3 
 sly-u.5   101248675   DNA-directed RNA polymerases II, IV and V subunit 3 
 sot-r.1   102598724   DNA-directed RNA polymerases II, IV and V subunit 3-like 
 nta-r.1   107832026   DNA-directed RNA polymerases II, IV and V subunit 3 
 nta-r.1   107789704   DNA-directed RNA polymerases II, IV and V subunit 3-like 
 osa-u.5   4346392   DNA-directed RNA polymerases II, IV and V subunit 3 
 zma-u.5   100282883   uncharacterized LOC100282883 
 tae-r.2   123111478   DNA-directed RNA polymerases II, IV and V subunit 3 
 tae-r.2   123120651   DNA-directed RNA polymerases II, IV and V subunit 3 
 tae-r.2   123149561   DNA-directed RNA polymerases II, IV and V subunit 3 
 hvu-r.1   123399713   DNA-directed RNA polymerases II, IV and V subunit 3-like 
 sbi-r.1   8063422   DNA-directed RNA polymerases II, IV and V subunit 3 
 bdi-r.1   100833824   DNA-directed RNA polymerases II, IV and V subunit 3 
 cre-r.1   CHLRE_10g419750v5   uncharacterized protein 

close


Top 50 coexpressed genes to 106409313 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 106409313 (bna-r.1 coexpression data)

CoexMap"106409313"


bnaLOC106409313 | Entrez gene ID : 106409313    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
bna03420 [list] [network] Nucleotide excision repair (233 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (76 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013705421.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  pero 1  (predict for XP_013705421.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013705421.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106409313
bna-r.1
for
106450001
bna-r.1
for
106445647
bna-r.1
for
106371538
bra-r.6
for
103847993
bra-r.6
for
103844364
ath-u.5
for
NRPE3B
ath-u.5
for
NRPB3
ghi-r.1
for
107922611
ghi-r.1
for
107945141
ghi-r.1
for
107953379
cit-r.1
for
102612811
gma-u.5
for
100792565
gma-u.5
for
100779047
vvi-u.5
for
100258926
ppo-u.5
for
7490057
mtr-u.5
for
11444055
sly-u.5
for
101248675
sot-r.1
for
102598724
nta-r.1
for
107832026
nta-r.1
for
107789704
osa-u.5
for
4346392
zma-u.5
for
100282883
tae-r.2
for
123111478
tae-r.2
for
123120651
tae-r.2
for
123149561
hvu-r.1
for
123399713
sbi-r.1
for
8063422
bdi-r.1
for
100833824
cre-r.1
for
CHLRE_10g419750v5


Ortholog ID: 5943
Species bna bna bna bra bra ath ath ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106409313 LOC106450001 LOC106445647 LOC103847993 LOC103844364 NRPE3B NRPB3 LOC107922611 LOC107945141 LOC121215966 LOC102612811 LOC100792565 LOC100779047 LOC100258926 LOC7490057 LOC11444055 LOC101248675 LOC102598724 LOC107832026 LOC107789704 LOC4346392 LOC100282883 LOC123111478 LOC123120651 LOC123161911 LOC123399713 LOC8063422 LOC100833824 CHLRE_10g419750v5
Function* DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerase family protein DNA-directed RNA polymerase family protein DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 uncharacterized LOC100282883 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3-like DNA-directed RNA polymerases II, IV and V subunit 3 DNA-directed RNA polymerases II, IV and V subunit 3 uncharacterized protein
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi04075 Plant hormone signal transduction 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03420 Nucleotide excision repair 6
ghi03018 RNA degradation 4
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 3
cit03420 Nucleotide excision repair 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 4
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03010 Ribosome 3
ppo03082 ATP-dependent chromatin remodeling 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 4
mtr03040 Spliceosome 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa03015 mRNA surveillance pathway 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae00480 Glutathione metabolism 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03040 Spliceosome 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106409313 106450001 106445647 103847993 103844364 816032 816035 107922611 107945141 121215966 102612811 100792565 100779047 100258926 7490057 11444055 101248675 102598724 107832026 107789704 4346392 100282883 123111478 123120651 123161911 123399713 8063422 100833824 5728298
The preparation time of this page was 0.2 [sec].