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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106410384   histone deacetylase 5 
 ath-u.5   HDA05   histone deacetylase 5 
 ath-u.5   HDA18   histone deacetylase of the RPD3/HDA1 superfamily 18 
 gma-u.5   HDA6   histone deacetylase 
 gma-u.5   HDA15   histone deacetylase 
 vvi-u.5   100250074   histone deacetylase 5 
 ppo-u.5   7493532   histone deacetylase 5 
 mtr-u.5   25493882   histone deacetylase 5 
 sly-u.5   101256079   histone deacetylase 5 
 osa-u.5   4343829   histone deacetylase 5 
 zma-u.5   541883   RPD3 histone deacetylase homolog 

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Top 50 coexpressed genes to 106410384 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106410384 (bna-r.1 coexpression data)

CoexMap"106410384"


bnaLOC106410384 | Entrez gene ID : 106410384    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006325 [list] [network] chromatin organization  (438 genes)  IEA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (99 genes)  IEA  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (26 genes)  IEA  
Protein XP_013706332.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 2,  chlo 1,  plas 1,  vacu 1,  pero 1,  cysk 1,  cysk_plas 1  (predict for XP_013706332.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013706332.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106410384

.
ath-u.5
for
HDA05

.
ath-u.5
for
HDA18

.
gma-u.5
for
HDA6

.
gma-u.5
for
HDA15

.
vvi-u.5
for
100250074

.
ppo-u.5
for
7493532

.
mtr-u.5
for
25493882

.
sly-u.5
for
101256079

.
osa-u.5
for
4343829

.
zma-u.5
for
541883

.


Ortholog ID: 5000
Species ath ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna cre cre sbi sot cit bdi nta nta
Symbol HDA05 HDA18 HDA6 HDA15 LOC101256079 LOC4343829 LOC541883 LOC103854929 LOC100250074 LOC7493532 LOC25493882 LOC123188026 LOC123138381 LOC123425379 LOC123443565 LOC107949789 LOC107887099 LOC106439946 CHLRE_11g467785v5 CHLRE_11g469600v5 LOC8060653 LOC102592093 LOC102622666 LOC100826085 LOC107823687 LOC107809119
Function* histone deacetylase 5 histone deacetylase of the RPD3/HDA1 superfamily 18 histone deacetylase histone deacetylase histone deacetylase 5 histone deacetylase 5 RPD3 histone deacetylase homolog histone deacetylase 5-like histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5-like histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 uncharacterized protein uncharacterized protein histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5 histone deacetylase 5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 2
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00270 Cysteine and methionine metabolism 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
tae05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 7
tae03060 Protein export 3
tae04145 Phagosome 3
tae00330 Arginine and proline metabolism 3
tae00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00770 Pantothenate and CoA biosynthesis 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
sot04145 Phagosome 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00790 Folate biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836227 836228 100788831 100807829 101256079 4343829 541883 103854929 100250074 7493532 25493882 123188026 123138381 123425379 123443565 107949789 107887099 106439946 66055277 66055304 8060653 102592093 102622666 100826085 107823687 107809119
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