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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106411012   eukaryotic initiation factor 4A-III homolog 
 bna-r.1   125608861   eukaryotic initiation factor 4A-III homolog 
 bna-r.1   106425130   eukaryotic initiation factor 4A-III homolog 
 bna-r.1   106424472   eukaryotic initiation factor 4A-III homolog 
 bra-r.6   103859825   eukaryotic initiation factor 4A-III homolog 
 bra-r.6   103869424   eukaryotic initiation factor 4A-III homolog 
 bra-r.6   103832857   DEAD-box ATP-dependent RNA helicase 34 
 ath-u.5   EIF4A-III   eukaryotic initiation factor 4A-III 
 ath-u.5   AT1G51380   DEA(D/H)-box RNA helicase family protein 
 ghi-r.1   107946114   eukaryotic initiation factor 4A-3 
 ghi-r.1   107937597   eukaryotic initiation factor 4A-3 
 ghi-r.1   107928882   eukaryotic initiation factor 4A-3 
 cit-r.1   102621986   eukaryotic initiation factor 4A-3 
 gma-u.5   100800020   eukaryotic initiation factor 4A-3 
 gma-u.5   100795032   eukaryotic initiation factor 4A-3 
 vvi-u.5   100255368   eukaryotic initiation factor 4A-3 
 ppo-u.5   7492084   eukaryotic initiation factor 4A-3 
 ppo-u.5   7456321   eukaryotic initiation factor 4A-3 
 mtr-u.5   25488222   eukaryotic initiation factor 4A-3 
 sly-u.5   101256152   eukaryotic initiation factor 4A-3 
 sot-r.1   102579743   eukaryotic initiation factor 4A-3 
 nta-r.1   107770285   eukaryotic initiation factor 4A-3 
 nta-r.1   107779209   eukaryotic initiation factor 4A-3-like 
 osa-u.5   EIF4A3A   eukaryotic initiation factor 4A-III homolog A-like 
 osa-u.5   4333273   eukaryotic initiation factor 4A-III homolog B-like 
 zma-u.5   732749   RH2 protein-like 
 zma-u.5   103627913   eukaryotic initiation factor 4A-III homolog A 
 tae-r.2   123055162   eukaryotic initiation factor 4A-III homolog B 
 tae-r.2   123140120   eukaryotic initiation factor 4A-III homolog B 
 tae-r.2   123047366   eukaryotic initiation factor 4A-III homolog B 
 hvu-r.1   123428372   eukaryotic initiation factor 4A-III homolog B-like 
 hvu-r.1   123401124   eukaryotic initiation factor 4A-III homolog B 
 sbi-r.1   8084458   DEAD-box ATP-dependent RNA helicase 2 
 bdi-r.1   100838725   eukaryotic initiation factor 4A-III homolog A 
 bdi-r.1   100830518   eukaryotic initiation factor 4A-III homolog A 
 bdi-r.1   100823142   eukaryotic initiation factor 4A-III homolog A 
 cre-r.1   CHLRE_03g199647v5   uncharacterized protein 

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Top 50 coexpressed genes to 106411012 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106411012 (bna-r.1 coexpression data)

CoexMap"106411012"


bnaLOC106411012 | Entrez gene ID : 106411012    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 1 2 1 2 1 1 1 2 2 2 3 2 1 3 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03013 [list] [network] Nucleocytoplasmic transport (328 genes)
bna03015 [list] [network] mRNA surveillance pathway (420 genes)
bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (615 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (186 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5995 genes)  IEA  
Protein XP_048628695.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  plas 1,  golg_plas 1  (predict for XP_048628695.1)
Subcellular
localization
TargetP
other 9  (predict for XP_048628695.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106411012
bna-r.1
for
125608861
bna-r.1
for
106425130
bna-r.1
for
106424472
bra-r.6
for
103859825
bra-r.6
for
103869424
bra-r.6
for
103832857
ath-u.5
for
EIF4A-III
ath-u.5
for
AT1G51380
ghi-r.1
for
107946114
ghi-r.1
for
107937597
ghi-r.1
for
107928882
cit-r.1
for
102621986
gma-u.5
for
100800020
gma-u.5
for
100795032
vvi-u.5
for
100255368
ppo-u.5
for
7492084
ppo-u.5
for
7456321
mtr-u.5
for
25488222
sly-u.5
for
101256152
sot-r.1
for
102579743
nta-r.1
for
107770285
nta-r.1
for
107779209
osa-u.5
for
EIF4A3A
osa-u.5
for
4333273
zma-u.5
for
732749
zma-u.5
for
103627913
tae-r.2
for
123055162
tae-r.2
for
123140120
tae-r.2
for
123047366
hvu-r.1
for
123428372
hvu-r.1
for
123401124
sbi-r.1
for
8084458
bdi-r.1
for
100838725
bdi-r.1
for
100830518
bdi-r.1
for
100823142
cre-r.1
for
CHLRE_03g199647v5


Ortholog ID: 3691
Species bna bna bna bra bra bra ath ath ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi bdi bdi bdi cre
Symbol LOC106411012 LOC106425130 LOC106427448 LOC103859825 LOC103832857 LOC103836967 EIF4A-III AT1G51380 LOC107937597 LOC107928882 LOC107920423 LOC102621986 LOC100800020 LOC100795032 LOC100255368 LOC7492084 LOC7456321 LOC25488222 LOC101256152 LOC102579743 LOC107770285 LOC107779209 EIF4A3A LOC4333273 LOC732749 LOC103627913 LOC123055162 LOC123140120 LOC123055169 LOC123428372 LOC123401124 LOC8084458 LOC100838725 LOC100830518 LOC100823142 CHLRE_03g199647v5
Function* eukaryotic initiation factor 4A-III homolog eukaryotic initiation factor 4A-III homolog DEAD-box ATP-dependent RNA helicase 34 eukaryotic initiation factor 4A-III homolog DEAD-box ATP-dependent RNA helicase 34 eukaryotic initiation factor 4A-III homolog eukaryotic initiation factor 4A-III DEA(D/H)-box RNA helicase family protein eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3 eukaryotic initiation factor 4A-3-like eukaryotic initiation factor 4A-III homolog A-like eukaryotic initiation factor 4A-III homolog B-like RH2 protein-like eukaryotic initiation factor 4A-III homolog A eukaryotic initiation factor 4A-III homolog B eukaryotic initiation factor 4A-III homolog B eukaryotic initiation factor 4A-III homolog B eukaryotic initiation factor 4A-III homolog B-like eukaryotic initiation factor 4A-III homolog B DEAD-box ATP-dependent RNA helicase 2 eukaryotic initiation factor 4A-III homolog A eukaryotic initiation factor 4A-III homolog A eukaryotic initiation factor 4A-III homolog A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03015 mRNA surveillance pathway 6
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03008 Ribosome biogenesis in eukaryotes 2
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 3
bra03015 mRNA surveillance pathway 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 5
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 2
ghi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03013 Nucleocytoplasmic transport 7
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 4
cit03013 Nucleocytoplasmic transport 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 8
gma03013 Nucleocytoplasmic transport 5
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 6
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 5
gma04626 Plant-pathogen interaction 2
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 5
sly03013 Nucleocytoplasmic transport 3
sly03040 Spliceosome 3
sly03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03013 Nucleocytoplasmic transport 6
sot03015 mRNA surveillance pathway 5
sot03010 Ribosome 3
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta00600 Sphingolipid metabolism 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03050 Proteasome 2
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03015 mRNA surveillance pathway 4
zma03040 Spliceosome 3
zma03050 Proteasome 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu04144 Endocytosis 2
hvu03050 Proteasome 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106411012 106425130 106427448 103859825 103832857 103836967 821513 841562 107937597 107928882 107920423 102621986 100800020 100795032 100255368 7492084 7456321 25488222 101256152 102579743 107770285 107779209 4326580 4333273 732749 103627913 123055162 123140120 123055169 123428372 123401124 8084458 100838725 100830518 100823142 5724972
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