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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106411111   transcription elongation factor TFIIS 
 bna-r.1   106450961   transcription elongation factor TFIIS 
 bna-r.1   106438146   transcription elongation factor TFIIS-like 
 bna-r.1   106411240   transcription elongation factor TFIIS 
 bra-r.6   103867092   transcription elongation factor TFIIS 
 bra-r.6   103857789   transcription elongation factor TFIIS 
 ath-u.5   TFIIS   transcript elongation factor IIS 
 ghi-r.1   107903762   transcription elongation factor TFIIS 
 ghi-r.1   107914501   transcription elongation factor TFIIS 
 cit-r.1   102631170   transcription elongation factor TFIIS 
 gma-u.5   100811982   transcription elongation factor TFIIS 
 gma-u.5   100776046   putative transcription elongation factor S-II-like 
 vvi-u.5   100263760   transcription elongation factor TFIIS 
 vvi-u.5   104881085   transcription elongation factor TFIIS 
 ppo-u.5   7472482   transcription elongation factor TFIIS 
 ppo-u.5   7484632   transcription elongation factor TFIIS 
 mtr-u.5   25489816   transcription elongation factor TFIIS 
 sly-u.5   101254979   transcription elongation factor TFIIS 
 sly-u.5   101267119   transcription elongation factor TFIIS 
 sot-r.1   102584918   transcription elongation factor TFIIS-like 
 sot-r.1   102581999   transcription elongation factor TFIIS-like 
 nta-r.1   107815837   transcription elongation factor TFIIS 
 nta-r.1   107806188   transcription elongation factor TFIIS 
 nta-r.1   107775588   transcription elongation factor TFIIS-like 
 osa-u.5   4342769   transcription elongation factor TFIIS 
 zma-u.5   118474708   transcription elongation factor TFIIS 
 zma-u.5   100274429   uncharacterized LOC100274429 
 zma-u.5   100282906   transcription elongation factor A protein 2 
 tae-r.2   123123433   transcription elongation factor TFIIS 
 tae-r.2   123113929   transcription elongation factor TFIIS 
 tae-r.2   123105610   transcription elongation factor TFIIS 
 hvu-r.1   123452958   transcription elongation factor TFIIS 
 sbi-r.1   8057071   transcription elongation factor TFIIS 
 bdi-r.1   100837763   transcription elongation factor TFIIS 
 cre-r.1   CHLRE_09g386350v5   uncharacterized protein 

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Top 50 coexpressed genes to 106411111 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106411111 (bna-r.1 coexpression data)

CoexMap"106411111"


bnaLOC106411111 | Entrez gene ID : 106411111    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 2 2 2 1 2 2 3 1 3 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (46 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (3493 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (12766 genes)  IEA  
Protein XP_013707251.1 [sequence] [blastp]
XP_048608526.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 4  (predict for XP_013707251.1)
chlo 5,  nucl 4  (predict for XP_048608526.1)
Subcellular
localization
TargetP
other 6  (predict for XP_013707251.1)
other 6  (predict for XP_048608526.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106411111
bna-r.1
for
106450961
bna-r.1
for
106438146
bna-r.1
for
106411240
bra-r.6
for
103867092
bra-r.6
for
103857789
ath-u.5
for
TFIIS
ghi-r.1
for
107903762
ghi-r.1
for
107914501
cit-r.1
for
102631170
gma-u.5
for
100811982
gma-u.5
for
100776046
vvi-u.5
for
100263760
vvi-u.5
for
104881085
ppo-u.5
for
7472482
ppo-u.5
for
7484632
mtr-u.5
for
25489816
sly-u.5
for
101254979
sly-u.5
for
101267119
sot-r.1
for
102584918
sot-r.1
for
102581999
nta-r.1
for
107815837
nta-r.1
for
107806188
nta-r.1
for
107775588
osa-u.5
for
4342769
zma-u.5
for
118474708
zma-u.5
for
100274429
zma-u.5
for
100282906
tae-r.2
for
123123433
tae-r.2
for
123113929
tae-r.2
for
123105610
hvu-r.1
for
123452958
sbi-r.1
for
8057071
bdi-r.1
for
100837763
cre-r.1
for
CHLRE_09g386350v5


Ortholog ID: 4699
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106411111 LOC106450961 LOC106438146 LOC103867092 LOC103857789 TFIIS LOC107903762 LOC107914501 LOC107896850 LOC102631170 LOC100811982 LOC100776046 LOC100263760 LOC104881085 LOC7472482 LOC7484632 LOC25489816 LOC101254979 LOC101267119 LOC102584918 LOC102581999 LOC107815837 LOC107775588 LOC107770057 LOC4342769 LOC118474708 LOC100274429 LOC100282906 LOC123123433 LOC123113929 LOC123105610 LOC123452958 LOC8057071 LOC100837763 CHLRE_09g386350v5
Function* transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS transcription elongation factor TFIIS transcript elongation factor IIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS putative transcription elongation factor S-II-like transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS-like transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS-like transcription elongation factor TFIIS transcription elongation factor TFIIS uncharacterized LOC100274429 transcription elongation factor A protein 2 transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106411111 106450961 106438146 103867092 103857789 818438 107903762 107914501 107896850 102631170 100811982 100776046 100263760 104881085 7472482 7484632 25489816 101254979 101267119 102584918 102581999 107815837 107775588 107770057 4342769 118474708 100274429 100282906 123123433 123113929 123105610 123452958 8057071 100837763 5720845
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