ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106411294	probable polygalacturonase
bna-r.1	106439444	probable polygalacturonase
bna-r.1	106385691	probable polygalacturonase
bna-r.1	106347677	probable polygalacturonase
bra-r.6	103854580	probable polygalacturonase
bra-r.6	103859685	probable polygalacturonase
bra-r.6	103869730	probable polygalacturonase
ath-u.5	AT3G06770	Pectin lyase-like superfamily protein
ath-u.5	AT3G16850	Pectin lyase-like superfamily protein
ath-u.5	AT5G49215	Pectin lyase-like superfamily protein
ghi-r.1	121208529	probable polygalacturonase
ghi-r.1	107940911	probable polygalacturonase
ghi-r.1	107926375	probable polygalacturonase
cit-r.1	102624542	probable polygalacturonase
gma-u.5	100797678	probable polygalacturonase
gma-u.5	100801823	probable polygalacturonase
vvi-u.5	100241496	probable polygalacturonase
vvi-u.5	100247060	probable polygalacturonase
vvi-u.5	109122642	probable polygalacturonase
ppo-u.5	18101890	probable polygalacturonase
ppo-u.5	7477215	probable polygalacturonase
mtr-u.5	25488046	probable polygalacturonase
mtr-u.5	11420255	probable polygalacturonase
sly-u.5	101268765	probable polygalacturonase
sly-u.5	101264974	probable polygalacturonase
sot-r.1	102598202	probable polygalacturonase
sot-r.1	102580232	probable polygalacturonase-like
nta-r.1	107811919	putative polygalacturonase
nta-r.1	107764241	putative polygalacturonase
nta-r.1	107776286	putative polygalacturonase
osa-u.5	4352486	probable polygalacturonase
osa-u.5	4351055	probable polygalacturonase
zma-u.5	100191454	uncharacterized LOC100191454
zma-u.5	100282607	polygalacturonase
tae-r.2	123091797	probable polygalacturonase
tae-r.2	123096876	probable polygalacturonase
tae-r.2	123119778	probable polygalacturonase
hvu-r.1	123395463	probable polygalacturonase
sbi-r.1	8070181	probable polygalacturonase
bdi-r.1	100822979	probable polygalacturonase
bdi-r.1	100846127	probable polygalacturonase

Top 50 coexpressed genes to 106411294 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106411294 (bna-r.1 coexpression data)

CoexMap"106411294"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(2192 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(211 genes)

IEA

Protein

XP_013707487.1 [sequence] [blastp]
XP_013707488.1 [sequence] [blastp]
XP_013707489.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, extr 2, nucl 1, vacu 1, E.R. 1, E.R._vacu 1	(predict for XP_013707487.1)
chlo 4, extr 4, vacu 1	(predict for XP_013707488.1)
chlo 4, extr 3, vacu 1, nucl 1, mito 1, E.R._vacu 1	(predict for XP_013707489.1)

Subcellular
localization
TargetP

scret 9	(predict for XP_013707487.1)
scret 6	(predict for XP_013707488.1)
scret 3	(predict for XP_013707489.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106411294	bna-r.1 for 106439444	bna-r.1 for 106385691	bna-r.1 for 106347677	bra-r.6 for 103854580	bra-r.6 for 103859685	bra-r.6 for 103869730	ath-u.5 for AT3G06770	ath-u.5 for AT3G16850	ath-u.5 for AT5G49215	ghi-r.1 for 121208529	ghi-r.1 for 107940911	ghi-r.1 for 107926375	cit-r.1 for 102624542	gma-u.5 for 100797678	gma-u.5 for 100801823	vvi-u.5 for 100241496	vvi-u.5 for 100247060	vvi-u.5 for 109122642	ppo-u.5 for 18101890	ppo-u.5 for 7477215	mtr-u.5 for 25488046	mtr-u.5 for 11420255	sly-u.5 for 101268765	sly-u.5 for 101264974	sot-r.1 for 102598202	sot-r.1 for 102580232	nta-r.1 for 107811919	nta-r.1 for 107764241	nta-r.1 for 107776286	osa-u.5 for 4352486	osa-u.5 for 4351055	zma-u.5 for 100191454	zma-u.5 for 100282607	tae-r.2 for 123091797	tae-r.2 for 123096876	tae-r.2 for 123119778	hvu-r.1 for 123395463	sbi-r.1 for 8070181	bdi-r.1 for 100822979	bdi-r.1 for 100846127

Ortholog

Ortholog ID: 2332

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

probable polygalacturonase

Pectin lyase-like superfamily protein

probable polygalacturonase

probable polygalacturonase-like

putative polygalacturonase

probable polygalacturonase

uncharacterized LOC100191454

polygalacturonase

probable polygalacturonase

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	4
sot04517	IgSF CAM signaling	4
sot04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa01250	Biosynthesis of nucleotide sugars	4
osa04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04145	Phagosome	2
zma04517	IgSF CAM signaling	2
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	3
tae00513	Various types of N-glycan biosynthesis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	3
tae00513	Various types of N-glycan biosynthesis	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00531	Glycosaminoglycan degradation	3
tae00600	Sphingolipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

106439444

106385691

106403076

103859685

103869730

103875025

819862

820938

834981

107940911

107896644

107888934

102624542

100801823

100777503

100241496

100247060

109122642

18101890

7477215

25488046

11420255

101268765

101264974

102598202

102580232

107764241

107776286

142179336

4352486

4351055

100191454

100282607

123091797

123096876

123110779

123395463

8070181

100822979

100846127

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	1	2	3	2	2	2	2	3	2	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106411294 (bna-r.1 coexpression data)

Top 50 enrichment test to 106411294 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**