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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106414278   DNA polymerase alpha catalytic subunit 
 bna-r.1   106358364   DNA polymerase alpha catalytic subunit 
 bna-r.1   106390345   DNA polymerase alpha catalytic subunit 
 bra-r.6   103853956   DNA polymerase alpha catalytic subunit-like 
 bra-r.6   103829539   DNA polymerase alpha catalytic subunit 
 ath-u.5   ICU2   DNA-directed DNA polymerase 
 ghi-r.1   107913234   DNA polymerase alpha catalytic subunit 
 ghi-r.1   107897934   DNA polymerase alpha catalytic subunit 
 cit-r.1   102618566   DNA polymerase alpha catalytic subunit 
 gma-u.5   100798779   DNA polymerase alpha catalytic subunit 
 vvi-u.5   100250805   DNA polymerase alpha catalytic subunit 
 ppo-u.5   7483107   DNA polymerase alpha catalytic subunit 
 mtr-u.5   11410926   DNA polymerase alpha catalytic subunit 
 sly-u.5   DNApolalpha   DNA polymerase alpha catalytic subunit 
 sot-r.1   102587331   DNA polymerase alpha catalytic subunit 
 nta-r.1   107796644   DNA polymerase alpha catalytic subunit-like 
 nta-r.1   107822467   DNA polymerase alpha catalytic subunit-like 
 osa-u.5   4325052   DNA polymerase alpha catalytic subunit-like 
 zma-u.5   100194009   uncharacterized LOC100194009 
 tae-r.2   123079889   DNA polymerase alpha catalytic subunit 
 tae-r.2   123071555   DNA polymerase alpha catalytic subunit 
 tae-r.2   123071553   DNA polymerase alpha catalytic subunit 
 hvu-r.1   123444793   DNA polymerase alpha catalytic subunit 
 sbi-r.1   8062384   DNA polymerase alpha catalytic subunit 
 bdi-r.1   100840820   DNA polymerase alpha catalytic subunit 
 cre-r.1   CHLRE_04g214350v5   uncharacterized protein 

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Top 50 coexpressed genes to 106414278 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106414278 (bna-r.1 coexpression data)

CoexMap"106414278"


bnaLOC106414278 | Entrez gene ID : 106414278    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03030 [list] [network] DNA replication (118 genes)
GO BP
GO:0006273 [list] [network] lagging strand elongation  (15 genes)  IEA  
GO:0006272 [list] [network] leading strand elongation  (16 genes)  IEA  
GO:1902975 [list] [network] mitotic DNA replication initiation  (17 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (669 genes)  IEA  
GO CC
GO:0005658 [list] [network] alpha DNA polymerase:primase complex  (14 genes)  IEA  
GO MF
GO:0019103 [list] [network] pyrimidine nucleotide binding  (5 genes)  IEA  
GO:0003688 [list] [network] DNA replication origin binding  (31 genes)  IEA  
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (51 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (274 genes)  IEA  
GO:0003682 [list] [network] chromatin binding  (399 genes)  IEA  
GO:0017076 [list] [network] purine nucleotide binding  (7551 genes)  IEA  
Protein XP_013710412.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_013710412.2)
Subcellular
localization
TargetP
other 6  (predict for XP_013710412.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106414278
bna-r.1
for
106358364
bna-r.1
for
106390345
bra-r.6
for
103853956
bra-r.6
for
103829539
ath-u.5
for
ICU2
ghi-r.1
for
107913234
ghi-r.1
for
107897934
cit-r.1
for
102618566
gma-u.5
for
100798779
vvi-u.5
for
100250805
ppo-u.5
for
7483107
mtr-u.5
for
11410926
sly-u.5
for
DNApolalpha
sot-r.1
for
102587331
nta-r.1
for
107796644
nta-r.1
for
107822467
osa-u.5
for
4325052
zma-u.5
for
100194009
tae-r.2
for
123079889
tae-r.2
for
123071555
tae-r.2
for
123071553
hvu-r.1
for
123444793
sbi-r.1
for
8062384
bdi-r.1
for
100840820
cre-r.1
for
CHLRE_04g214350v5


Ortholog ID: 8675
Species bna bna bra bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106358364 LOC106390345 LOC103853956 LOC103829539 ICU2 LOC107913234 LOC107897934 LOC102618566 LOC100798779 LOC100250805 LOC7483107 LOC11410926 DNApolalpha LOC102587331 LOC107796644 LOC107822467 LOC4325052 LOC100194009 LOC123071555 LOC123071553 LOC123062734 LOC123444793 LOC8062384 LOC100840820 CHLRE_04g214350v5
Function* DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit-like DNA polymerase alpha catalytic subunit DNA-directed DNA polymerase DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit-like DNA polymerase alpha catalytic subunit-like DNA polymerase alpha catalytic subunit-like uncharacterized LOC100194009 DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit DNA polymerase alpha catalytic subunit uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 9
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 10
bra03420 Nucleotide excision repair 3
bra03430 Mismatch repair 3
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 10
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 12
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 12
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 8
cit04814 Motor proteins 3
cit03440 Homologous recombination 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 10
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 2
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 12
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 10
osa03440 Homologous recombination 3
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03430 Mismatch repair 3
zma03030 DNA replication 3
zma03410 Base excision repair 3
zma00270 Cysteine and methionine metabolism 2
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03440 Homologous recombination 7
tae03430 Mismatch repair 6
tae03410 Base excision repair 4
tae03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 7
tae03440 Homologous recombination 6
tae03460 Fanconi anemia pathway 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 4
hvu03030 DNA replication 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 4
bdi03410 Base excision repair 3
bdi03420 Nucleotide excision repair 3
bdi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 5
cre03410 Base excision repair 3
cre03420 Nucleotide excision repair 3
cre03430 Mismatch repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106358364 106390345 103853956 103829539 836845 107913234 107897934 102618566 100798779 100250805 7483107 11410926 101055576 102587331 107796644 107822467 4325052 100194009 123071555 123071553 123062734 123444793 8062384 100840820 5724235
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