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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1  106418177  nuclear transcription factor Y subunit B-6 
 bna-r.1  125575342  nuclear transcription factor Y subunit B-9-like 
 bna-r.1  106454772  nuclear transcription factor Y subunit B-9 
 bna-r.1  106358189  nuclear transcription factor Y subunit B-9-like 
 bra-r.6  103839510  nuclear transcription factor Y subunit B-6 
 bra-r.6  103829359  nuclear transcription factor Y subunit B-9 
 ath-u.5  NF-YB6  nuclear factor Y, subunit B6 
 ath-u.5  LEC1  Histone superfamily protein 
 ghi-r.1  107905698  nuclear transcription factor Y subunit B-6 
 cit-r.1  102610438  nuclear transcription factor Y subunit B-6 
 gma-u.5  LEC1-A  transcription factor LEC1-A 
 gma-u.5  LEC1-B  nuclear transcription factor Y subunit B-6-like 
 vvi-u.5  100855401  nuclear transcription factor Y subunit B-6 
 zma-u.5  103654015  nuclear transcription factor Y subunit B-2 
 zma-u.5  542498  leafy cotyledon 
 bdi-r.1  100830019  nuclear transcription factor Y subunit B-3 

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Top 50 coexpressed genes to 106418177 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106418177 (bna-r.1 coexpression data)

CoexMap"106418177"


bnaLOC106418177 | Entrez gene ID : 106418177
Species bna bra ath ghi cit gma vvi zma bdi sot sly nta osa tae ppo cre mtr sbi hvu
Paralog 4 2 2 1 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0016602 [list] [network] CCAAT-binding factor complex  (71 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific  (54 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (268 genes)  IEA  
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (792 genes)  IEA  
Protein XP_013714298.1 [sequence] [blastp]
XP_048624452.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  plas 1,  extr 1,  pero 1,  cyto_E.R. 1  (predict for XP_013714298.1)
nucl 5,  cyto 2,  mito 1,  cyto_plas 1  (predict for XP_048624452.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013714298.1)
other 6  (predict for XP_048624452.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

bna-r.1
for
106418177


bna-r.1
for
125575342


bna-r.1
for
106454772


bna-r.1
for
106358189


bra-r.6
for
103839510


bra-r.6
for
103829359


ath-u.5
for
NF-YB6


ath-u.5
for
LEC1


ghi-r.1
for
107905698


cit-r.1
for
102610438


gma-u.5
for
LEC1-A


gma-u.5
for
LEC1-B


vvi-u.5
for
100855401


zma-u.5
for
103654015


zma-u.5
for
542498


bdi-r.1
for
100830019



Ortholog ID: 3046
Species bna bna bna bra bra ath ath ghi cit gma gma vvi sot zma zma bdi
Symbol LOC106418177 LOC106432034 LOC106425624 LOC103839510 LOC103829359 NF-YB6 LEC1 LOC121229421 LOC102610438 LEC1-B LOC547959 LOC100855401 LOC102592041 LOC103654015 LOC542498 LOC100830019
Function* nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-9-like nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-9 nuclear factor Y, subunit B6 Histone superfamily protein nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6-like nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-6 nuclear transcription factor Y subunit B-1-like nuclear transcription factor Y subunit B-2 leafy cotyledon nuclear transcription factor Y subunit B-3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00910 Nitrogen metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106418177 106432034 106425624 103839510 103829359 834818 838800 121229421 102610438 100800011 547959 100855401 102592041 103654015 542498 100830019
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