ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106418791	phosphoribulokinase, chloroplastic
bna-r.1	106435161	phosphoribulokinase, chloroplastic
bna-r.1	125596123	phosphoribulokinase, chloroplastic
bna-r.1	125574834	phosphoribulokinase, chloroplastic-like
bra-r.6	103840194	phosphoribulokinase, chloroplastic
bra-r.6	103833678	phosphoribulokinase, chloroplastic
bra-r.6	103868914	phosphoribulokinase, chloroplastic
ath-u.5	PRK	phosphoribulokinase
ghi-r.1	107946652	phosphoribulokinase, chloroplastic
ghi-r.1	107941387	phosphoribulokinase, chloroplastic
ghi-r.1	107946792	phosphoribulokinase, chloroplastic
cit-r.1	102612734	phosphoribulokinase, chloroplastic
gma-u.5	100777515	phosphoribulokinase, chloroplastic
gma-u.5	100807126	phosphoribulokinase, chloroplastic
vvi-u.5	100244092	phosphoribulokinase, chloroplastic
ppo-u.5	18094096	phosphoribulokinase, chloroplastic
ppo-u.5	7465461	phosphoribulokinase, chloroplastic
mtr-u.5	11412336	phosphoribulokinase, chloroplastic
sly-u.5	101255322	phosphoribulokinase, chloroplastic
sot-r.1	102591470	phosphoribulokinase, chloroplastic
nta-r.1	107761746	phosphoribulokinase, chloroplastic-like
nta-r.1	107773234	phosphoribulokinase, chloroplastic
nta-r.1	107830375	phosphoribulokinase, chloroplastic
osa-u.5	4330413	phosphoribulokinase, chloroplastic
zma-u.5	100282845	Phosphoribulokinase
zma-u.5	100281866	Phosphoribulokinase
zma-u.5	100279820	uncharacterized LOC100279820
tae-r.2	123137868	phosphoribulokinase, chloroplastic-like
tae-r.2	123128079	phosphoribulokinase, chloroplastic-like
tae-r.2	543283	phosphoribulokinase, chloroplastic-like
hvu-r.1	123404301	phosphoribulokinase, chloroplastic
sbi-r.1	110434320	phosphoribulokinase, chloroplastic
sbi-r.1	8071104	phosphoribulokinase, chloroplastic
bdi-r.1	100837995	phosphoribulokinase, chloroplastic
cre-r.1	CHLRE_12g554800v5	uncharacterized protein

Top 50 coexpressed genes to 106418791 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106418791 (bna-r.1 coexpression data)

CoexMap"106418791"

[Cytoscape]

Annotation

functional annotation

KEGG

bna00710 [list] [network] Carbon fixation by Calvin cycle (246 genes)

bna01200 [list] [network] Carbon metabolism (888 genes)

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(2192 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast	(1821 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(16489 genes)	IEA

GO MF

GO:0008974 [list] [network] phosphoribulokinase activity	(8 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5995 genes)	IEA

Protein

XP_013714998.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for XP_013714998.2)

Subcellular
localization
TargetP

chlo 8

(predict for XP_013714998.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106418791	bna-r.1 for 106435161	bna-r.1 for 125596123	bna-r.1 for 125574834	bra-r.6 for 103840194	bra-r.6 for 103833678	bra-r.6 for 103868914	ath-u.5 for PRK	ghi-r.1 for 107946652	ghi-r.1 for 107941387	ghi-r.1 for 107946792	cit-r.1 for 102612734	gma-u.5 for 100777515	gma-u.5 for 100807126	vvi-u.5 for 100244092	ppo-u.5 for 18094096	ppo-u.5 for 7465461	mtr-u.5 for 11412336	sly-u.5 for 101255322	sot-r.1 for 102591470	nta-r.1 for 107761746	nta-r.1 for 107773234	nta-r.1 for 107830375	osa-u.5 for 4330413	zma-u.5 for 100282845	zma-u.5 for 100281866	zma-u.5 for 100279820	tae-r.2 for 123137868	tae-r.2 for 123128079	tae-r.2 for 543283	hvu-r.1 for 123404301	sbi-r.1 for 110434320	sbi-r.1 for 8071104	bdi-r.1 for 100837995	cre-r.1 for CHLRE_12g554800v5

Ortholog

Ortholog ID: 4470

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PRK

Function^*

phosphoribulokinase, chloroplastic

phosphoribulokinase

phosphoribulokinase, chloroplastic

phosphoribulokinase, chloroplastic-like

phosphoribulokinase, chloroplastic

Phosphoribulokinase

uncharacterized LOC100279820

phosphoribulokinase, chloroplastic-like

phosphoribulokinase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	11
bna01200	Carbon metabolism	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	11
bna01200	Carbon metabolism	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	15
bna01200	Carbon metabolism	15
bna00010	Glycolysis / Gluconeogenesis	4
bna00030	Pentose phosphate pathway	4
bna00051	Fructose and mannose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	9
bra00710	Carbon fixation by Calvin cycle	5
bra01200	Carbon metabolism	5
bra00190	Oxidative phosphorylation	2
bra00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	7
bra00710	Carbon fixation by Calvin cycle	6
bra00010	Glycolysis / Gluconeogenesis	2
bra00030	Pentose phosphate pathway	2
bra00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	5
bra00630	Glyoxylate and dicarboxylate metabolism	4
bra00710	Carbon fixation by Calvin cycle	3
bra04146	Peroxisome	2
bra00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	16
ath00710	Carbon fixation by Calvin cycle	11
ath00630	Glyoxylate and dicarboxylate metabolism	8
ath00260	Glycine, serine and threonine metabolism	3
ath01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00710	Carbon fixation by Calvin cycle	4
ghi01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00710	Carbon fixation by Calvin cycle	4
ghi01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00710	Carbon fixation by Calvin cycle	4
ghi01200	Carbon metabolism	4
ghi00910	Nitrogen metabolism	4
ghi01310	Nitrogen cycle	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	10
cit00710	Carbon fixation by Calvin cycle	8
cit00010	Glycolysis / Gluconeogenesis	4
cit00620	Pyruvate metabolism	3
cit00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	9
gma01200	Carbon metabolism	9
gma00195	Photosynthesis	3
gma00010	Glycolysis / Gluconeogenesis	2
gma00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	11
gma01200	Carbon metabolism	11
gma00010	Glycolysis / Gluconeogenesis	5
gma00030	Pentose phosphate pathway	5
gma00051	Fructose and mannose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	10
vvi00710	Carbon fixation by Calvin cycle	8
vvi00010	Glycolysis / Gluconeogenesis	3
vvi00030	Pentose phosphate pathway	3
vvi00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00710	Carbon fixation by Calvin cycle	7
ppo01200	Carbon metabolism	7
ppo01230	Biosynthesis of amino acids	3
ppo00195	Photosynthesis	3
ppo00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	4
ppo01200	Carbon metabolism	3
ppo00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	6
mtr00710	Carbon fixation by Calvin cycle	4
mtr00195	Photosynthesis	3
mtr00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	13
sly00710	Carbon fixation by Calvin cycle	11
sly00630	Glyoxylate and dicarboxylate metabolism	4
sly00010	Glycolysis / Gluconeogenesis	3
sly00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	6
sot00710	Carbon fixation by Calvin cycle	5
sot00195	Photosynthesis	4
sot00010	Glycolysis / Gluconeogenesis	2
sot00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00710	Carbon fixation by Calvin cycle	5
nta01200	Carbon metabolism	5
nta00010	Glycolysis / Gluconeogenesis	3
nta00030	Pentose phosphate pathway	3
nta00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00710	Carbon fixation by Calvin cycle	10
nta01200	Carbon metabolism	10
nta00630	Glyoxylate and dicarboxylate metabolism	6
nta00190	Oxidative phosphorylation	2
nta00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta00860	Porphyrin metabolism	2
nta00710	Carbon fixation by Calvin cycle	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01200	Carbon metabolism	9
osa00710	Carbon fixation by Calvin cycle	7
osa00630	Glyoxylate and dicarboxylate metabolism	4
osa00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	12
zma00710	Carbon fixation by Calvin cycle	10
zma00630	Glyoxylate and dicarboxylate metabolism	4
zma00010	Glycolysis / Gluconeogenesis	3
zma00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00710	Carbon fixation by Calvin cycle	2
zma01200	Carbon metabolism	2
zma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	9
zma00710	Carbon fixation by Calvin cycle	6
zma01200	Carbon metabolism	6
zma00010	Glycolysis / Gluconeogenesis	2
zma00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00710	Carbon fixation by Calvin cycle	7
tae01200	Carbon metabolism	7
tae00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	7
tae00710	Carbon fixation by Calvin cycle	4
tae00260	Glycine, serine and threonine metabolism	3
tae00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	6
tae00710	Carbon fixation by Calvin cycle	4
tae00196	Photosynthesis - antenna proteins	2
tae00260	Glycine, serine and threonine metabolism	2
tae00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	7
hvu00710	Carbon fixation by Calvin cycle	5
hvu00630	Glyoxylate and dicarboxylate metabolism	4
hvu00196	Photosynthesis - antenna proteins	4
hvu00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	8
sbi00196	Photosynthesis - antenna proteins	5
sbi00710	Carbon fixation by Calvin cycle	3
sbi01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	5
bdi00630	Glyoxylate and dicarboxylate metabolism	4
bdi00710	Carbon fixation by Calvin cycle	4
bdi00260	Glycine, serine and threonine metabolism	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00710	Carbon fixation by Calvin cycle	8
cre01200	Carbon metabolism	8
cre00030	Pentose phosphate pathway	5
cre00010	Glycolysis / Gluconeogenesis	4
cre01230	Biosynthesis of amino acids	4

Expression

Expression pattern

Entrez Gene ID^*

106451744

125603616

106451740

103840194

103833678

103868914

840098

107941387

107946792

107938584

102612734

100777515

100807126

100244092

18094096

7465461

11412336

101255322

102591470

107761746

107773234

107831114

4330413

100282845

100281866

100279820

123137868

123128079

543283

123404301

110434320

8071104

100837995

5719722

The preparation time of this page was 0.2 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	1	3	1	2	1	2	1	1	1	3	1	3	3	1	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106418791 (bna-r.1 coexpression data)

Top 50 enrichment test to 106418791 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**