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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106420004   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 
 ath-u.5   LSH3   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-u.5   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 gma-u.5   100802937   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 gma-u.5   100803605   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 vvi-u.5   104879291   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 vvi-u.5   100254926   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 vvi-u.5   100244642   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 ppo-u.5   7471962   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 
 ppo-u.5   7487704   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 
 ppo-u.5   7474992   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 
 mtr-u.5   11410358   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 mtr-u.5   25493337   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 sly-u.5   101261831   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like 
 sly-u.5   TFAM1   TMF family protein 
 sly-u.5   101244207   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 osa-u.5   4341811   protein G1-like2 
 osa-u.5   107278201   protein G1-like8 
 zma-u.5   100274783   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100275232   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100278049   uncharacterized LOC100278049 

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Top 50 coexpressed genes to 106420004 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106420004 (bna-r.1 coexpression data)

CoexMap"106420004"


bnaLOC106420004 | Entrez gene ID : 106420004    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 2 3 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009299 [list] [network] mRNA transcription  (62 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (379 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_013716296.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1  (predict for XP_013716296.2)
Subcellular
localization
TargetP
other 6,  chlo 6  (predict for XP_013716296.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106420004

.
ath-u.5
for
LSH3

.
ath-u.5
for
LSH5

.
gma-u.5
for
100802937

.
gma-u.5
for
100803605

.
vvi-u.5
for
104879291

.
vvi-u.5
for
100254926

.
vvi-u.5
for
100244642

.
ppo-u.5
for
7471962

.
ppo-u.5
for
7487704

.
ppo-u.5
for
7474992

.
mtr-u.5
for
11410358

.
mtr-u.5
for
25493337

.
sly-u.5
for
101261831

.
sly-u.5
for
TFAM1

.
sly-u.5
for
101244207

.
osa-u.5
for
4341811

.
osa-u.5
for
107278201

.
zma-u.5
for
100274783

.
zma-u.5
for
100275232

.
zma-u.5
for
100278049

.


Ortholog ID: 68
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol LSH3 LSH6 LOC102663941 LOC100803605 LOC101261831 LOC101256738 LOC4336401 LOC107278610 LOC100304411 LOC100381724 LOC103874577 LOC103828755 LOC100260366 LOC100249172 LOC7460096 LOC7467540 LOC11408401 LOC11407427 LOC123182342 LOC123402509 LOC123444893 LOC107958534 LOC107936786 LOC125602819 LOC106391304 LOC8054276 LOC8072493 LOC102600485 LOC102583639 LOC102606613 LOC102612277 LOC100822544 LOC100821276 LOC107766017 LOC107794180
Function* LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein G1-like4 protein G1-like7 putative protein of unknown function (DUF640) domain family protein putative protein of unknown function (DUF640) domain family protein protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 protein G1-like7 protein G1-like3 protein G1-like8 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-like protein G1-like4 protein G1-like4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like hypothetical protein protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein G1-like1 protein G1-like4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
ath04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00941 Flavonoid biosynthesis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00061 Fatty acid biosynthesis 3
cit01040 Biosynthesis of unsaturated fatty acids 3
cit01212 Fatty acid metabolism 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817672 837220 102663941 100803605 101261831 101256738 4336401 107278610 100304411 100381724 103874577 103828755 100260366 100249172 7460096 7467540 11408401 11407427 123182342 123402509 123444893 107958534 107936786 125602819 106391304 8054276 8072493 102600485 102583639 102606613 102612277 100822544 100821276 107766017 107794180
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