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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106426202   zinc finger protein VAR3, chloroplastic 
 bna-r.1   106387749   zinc finger protein VAR3, chloroplastic-like 
 bna-r.1   106386521   zinc finger protein VAR3, chloroplastic 
 bna-r.1   125595195   zinc finger protein VAR3, chloroplastic-like 
 bra-r.6   103856263   zinc finger protein VAR3, chloroplastic 
 bra-r.6   103845899   zinc finger protein VAR3, chloroplastic 
 ath-u.5   VAR3   zinc finger (Ran-binding) family protein 
 ghi-r.1   121204728   zinc finger protein VAR3, chloroplastic 
 ghi-r.1   107936306   zinc finger protein VAR3, chloroplastic 
 cit-r.1   102612795   zinc finger protein VAR3, chloroplastic 
 gma-u.5   100775801   zinc finger protein VAR3, chloroplastic 
 gma-u.5   100792849   zinc finger protein VAR3, chloroplastic 
 vvi-u.5   100262132   zinc finger protein VAR3, chloroplastic 
 ppo-u.5   7482390   zinc finger protein VAR3, chloroplastic 
 mtr-u.5   25498993   zinc finger protein VAR3, chloroplastic 
 sly-u.5   101264457   zinc finger protein VAR3, chloroplastic 
 sot-r.1   102587958   zinc finger protein VAR3, chloroplastic 
 nta-r.1   107824849   zinc finger protein VAR3, chloroplastic-like 
 nta-r.1   107809746   zinc finger protein VAR3, chloroplastic 
 nta-r.1   107792096   zinc finger protein VAR3, chloroplastic 
 osa-u.5   4327482   zinc finger protein VAR3, chloroplastic 
 zma-u.5   103651081   zinc finger protein VAR3, chloroplastic 
 zma-u.5   100273872   Zinc finger protein VAR3 chloroplastic 
 tae-r.2   123062407   zinc finger protein VAR3, chloroplastic 
 tae-r.2   123071185   zinc finger protein VAR3, chloroplastic 
 tae-r.2   123079544   zinc finger protein VAR3, chloroplastic 
 hvu-r.1   123444693   zinc finger protein VAR3, chloroplastic 
 sbi-r.1   8085387   zinc finger protein VAR3, chloroplastic 
 bdi-r.1   100832627   zinc finger protein VAR3, chloroplastic 

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Top 50 coexpressed genes to 106426202 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106426202 (bna-r.1 coexpression data)

CoexMap"106426202"


bnaLOC106426202 | Entrez gene ID : 106426202    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 2 1 1 1 1 1 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_013722371.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_013722371.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013722371.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106426202
bna-r.1
for
106387749
bna-r.1
for
106386521
bna-r.1
for
125595195
bra-r.6
for
103856263
bra-r.6
for
103845899
ath-u.5
for
VAR3
ghi-r.1
for
121204728
ghi-r.1
for
107936306
cit-r.1
for
102612795
gma-u.5
for
100775801
gma-u.5
for
100792849
vvi-u.5
for
100262132
ppo-u.5
for
7482390
mtr-u.5
for
25498993
sly-u.5
for
101264457
sot-r.1
for
102587958
nta-r.1
for
107824849
nta-r.1
for
107809746
nta-r.1
for
107792096
osa-u.5
for
4327482
zma-u.5
for
103651081
zma-u.5
for
100273872
tae-r.2
for
123062407
tae-r.2
for
123071185
tae-r.2
for
123079544
hvu-r.1
for
123444693
sbi-r.1
for
8085387
bdi-r.1
for
100832627


Ortholog ID: 8142
Species bna bna bna bra bra ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC106387749 LOC106386521 LOC125595195 LOC103856263 LOC103845899 VAR3 LOC121204728 LOC107936306 LOC102612795 LOC100775801 LOC100792849 LOC100262132 LOC7482390 LOC25498993 LOC101264457 LOC102587958 LOC107824849 LOC107809746 LOC107792096 LOC4327482 LOC103651081 LOC100273872 LOC123062407 LOC123071185 LOC123079544 LOC123444693 LOC8085387 LOC100832627
Function* zinc finger protein VAR3, chloroplastic-like zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic-like zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger (Ran-binding) family protein zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic-like zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic Zinc finger protein VAR3 chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 5
bna00860 Porphyrin metabolism 3
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 5
bna00860 Porphyrin metabolism 3
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 6
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 6
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot03008 Ribosome biogenesis in eukaryotes 3
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
sot00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106387749 106386521 125595195 103856263 103845899 831647 121204728 107936306 102612795 100775801 100792849 100262132 7482390 25498993 101264457 102587958 107824849 107809746 107792096 4327482 103651081 100273872 123062407 123071185 123079544 123444693 8085387 100832627
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