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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8085387   zinc finger protein VAR3, chloroplastic 
 zma-u.5   103651081   zinc finger protein VAR3, chloroplastic 
 zma-u.5   100273872   Zinc finger protein VAR3 chloroplastic 
 osa-u.5   4327482   zinc finger protein VAR3, chloroplastic 
 ath-u.5   VAR3   zinc finger (Ran-binding) family protein 
 gma-u.5   100775801   zinc finger protein VAR3, chloroplastic 
 gma-u.5   100792849   zinc finger protein VAR3, chloroplastic 
 sly-u.5   101264457   zinc finger protein VAR3, chloroplastic 
 vvi-u.5   100262132   zinc finger protein VAR3, chloroplastic 
 ppo-u.5   7482390   zinc finger protein VAR3, chloroplastic 
 mtr-u.5   25498993   zinc finger protein VAR3, chloroplastic 

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Top 50 coexpressed genes to 8085387 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8085387 (sbi-r.1 coexpression data)

CoexMap"8085387"


sbiLOC8085387 | Entrez gene ID : 8085387      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (267 genes)  IEA  
Protein XP_002456528.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_002456528.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_002456528.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8085387

.
zma-u.5
for
103651081

.
zma-u.5
for
100273872

.
osa-u.5
for
4327482

.
ath-u.5
for
VAR3

.
gma-u.5
for
100775801

.
gma-u.5
for
100792849

.
sly-u.5
for
101264457

.
vvi-u.5
for
100262132

.
ppo-u.5
for
7482390

.
mtr-u.5
for
25498993

.


Ortholog ID: 8142
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol VAR3 LOC100792849 LOC100775801 LOC101264457 LOC4327482 LOC103651081 LOC100273872 LOC103845899 LOC103856263 LOC100262132 LOC7482390 LOC25498993 LOC123079544 LOC123062407 LOC123444693 LOC107936306 LOC121204728 LOC106387749 LOC125595195 LOC8085387 LOC102587958 LOC102612795 LOC100832627 LOC107824849 LOC107809746
Function* zinc finger (Ran-binding) family protein zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic Zinc finger protein VAR3 chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic-like zinc finger protein VAR3, chloroplastic-like zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic-like zinc finger protein VAR3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00230 Purine metabolism 2
mtr00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 6
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04144 Endocytosis 6
ghi00230 Purine metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01240 Biosynthesis of cofactors 5
bna00860 Porphyrin metabolism 3
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot03008 Ribosome biogenesis in eukaryotes 3
sot00020 Citrate cycle (TCA cycle) 2
sot00270 Cysteine and methionine metabolism 2
sot00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831647 100792849 100775801 101264457 4327482 103651081 100273872 103845899 103856263 100262132 7482390 25498993 123079544 123062407 123444693 107936306 121204728 106387749 125595195 8085387 102587958 102612795 100832627 107824849 107809746
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