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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106426214   exosome complex component CSL4 
 bna-r.1   111199501   exosome complex component CSL4-like 
 bra-r.6   103831079   exosome complex component CSL4 
 ath-u.5   AT5G38890   Nucleic acid-binding, OB-fold-like protein 
 ghi-r.1   121203562   exosome complex component CSL4 
 ghi-r.1   107936888   exosome complex component CSL4 
 cit-r.1   102627664   uncharacterized LOC102627664 
 gma-u.5   100796154   exosome complex component CSL4-like 
 ppo-u.5   18104099   uncharacterized LOC18104099 
 mtr-u.5   25484620   exosome complex component CSL4 
 sly-u.5   101246918   uncharacterized LOC101246918 
 sot-r.1   107058202   exosome complex component CSL4 
 nta-r.1   107807207   uncharacterized LOC107807207 
 nta-r.1   107796188   uncharacterized LOC107796188 
 osa-u.5   4331133   exosome complex component csl4 
 zma-u.5   100281965   uncharacterized LOC100281965 
 tae-r.2   123113056   exosome complex component CSL4 
 tae-r.2   123104767   exosome complex component CSL4 
 tae-r.2   123125419   exosome complex component CSL4 
 hvu-r.1   123451932   exosome complex component CSL4 
 sbi-r.1   8056440   exosome complex component CSL4 
 bdi-r.1   100834661   exosome complex component csl4 
 cre-r.1   CHLRE_07g312750v5   uncharacterized protein 

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Top 50 coexpressed genes to 106426214 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106426214 (bna-r.1 coexpression data)

CoexMap"106426214"


bnaLOC106426214 | Entrez gene ID : 106426214    
Species bna bra ath ghi cit gma ppo mtr sly sot nta osa zma tae hvu sbi bdi cre vvi
Paralog 2 1 1 2 1 1 1 1 1 1 2 1 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0006396 [list] [network] RNA processing  (1786 genes)  IEA  
GO CC
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (40 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013722382.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_013722382.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013722382.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106426214
bna-r.1
for
111199501
bra-r.6
for
103831079
ath-u.5
for
AT5G38890
ghi-r.1
for
121203562
ghi-r.1
for
107936888
cit-r.1
for
102627664
gma-u.5
for
100796154
ppo-u.5
for
18104099
mtr-u.5
for
25484620
sly-u.5
for
101246918
sot-r.1
for
107058202
nta-r.1
for
107807207
nta-r.1
for
107796188
osa-u.5
for
4331133
zma-u.5
for
100281965
tae-r.2
for
123113056
tae-r.2
for
123104767
tae-r.2
for
123125419
hvu-r.1
for
123451932
sbi-r.1
for
8056440
bdi-r.1
for
100834661
cre-r.1
for
CHLRE_07g312750v5


Ortholog ID: 10971
Species bna bna bra ath ghi ghi cit gma ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106426214 LOC111199501 LOC103831079 AT5G38890 LOC121203562 LOC107936888 LOC102627664 LOC100796154 LOC18104099 LOC25484620 LOC101246918 LOC107058202 LOC107807207 LOC107796188 LOC4331133 LOC100281965 LOC123113056 LOC123104767 LOC123125419 LOC123451932 LOC8056440 LOC100834661 CHLRE_07g312750v5
Function* exosome complex component CSL4 exosome complex component CSL4-like exosome complex component CSL4 Nucleic acid-binding, OB-fold-like protein exosome complex component CSL4 exosome complex component CSL4 uncharacterized LOC102627664 exosome complex component CSL4-like uncharacterized LOC18104099 exosome complex component CSL4 uncharacterized LOC101246918 exosome complex component CSL4 uncharacterized LOC107807207 uncharacterized LOC107796188 exosome complex component csl4 uncharacterized LOC100281965 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component csl4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 3
sly03018 RNA degradation 3
sly03030 DNA replication 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta00030 Pentose phosphate pathway 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta01200 Carbon metabolism 3
nta00030 Pentose phosphate pathway 2
nta01230 Biosynthesis of amino acids 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106426214 111199501 103831079 833880 121203562 107936888 102627664 100796154 18104099 25484620 101246918 107058202 107807207 107796188 4331133 100281965 123113056 123104767 123125419 123451932 8056440 100834661 5726326
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