Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_07g312750v5   uncharacterized protein 
 ath-u.5   AT5G38890   Nucleic acid-binding, OB-fold-like protein 
 gma-u.5   100796154   exosome complex component CSL4-like 
 sly-u.5   101246918   uncharacterized LOC101246918 
 osa-u.5   4331133   exosome complex component csl4 
 zma-u.5   100281965   uncharacterized LOC100281965 
 ppo-u.5   18104099   uncharacterized LOC18104099 
 mtr-u.5   25484620   exosome complex component CSL4 

close


Top 50 coexpressed genes to CHLRE_07g312750v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to CHLRE_07g312750v5 (cre-r.1 coexpression data)

CoexMap"5726326"


creCHLRE_07g312750v5 | Entrez gene ID : 5726326      
Species cre ath gma sly osa zma ppo mtr sbi nta bra vvi cit hvu bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03018 [list] [network] RNA degradation (48 genes)
GO BP
GO:0006396 [list] [network] RNA processing  (507 genes)  IEA  
GO CC
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (12 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_001700955.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 4,  mito 1,  extr 1  (predict for XP_001700955.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001700955.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_07g312750v5

.
ath-u.5
for
AT5G38890

.
gma-u.5
for
100796154

.
sly-u.5
for
101246918

.
osa-u.5
for
4331133

.
zma-u.5
for
100281965

.
ppo-u.5
for
18104099

.
mtr-u.5
for
25484620

.


Ortholog ID: 10971
Species ath gma sly osa zma bra ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G38890 LOC100796154 LOC101246918 LOC4331133 LOC100281965 LOC103831079 LOC18104099 LOC25484620 LOC123113056 LOC123125419 LOC123451932 LOC121203562 LOC107936888 LOC111199501 LOC106426214 CHLRE_07g312750v5 LOC8056440 LOC107058202 LOC102627664 LOC100834661 LOC107796188 LOC107807207
Function* Nucleic acid-binding, OB-fold-like protein exosome complex component CSL4-like uncharacterized LOC101246918 exosome complex component csl4 uncharacterized LOC100281965 exosome complex component CSL4 uncharacterized LOC18104099 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4 exosome complex component CSL4-like exosome complex component CSL4 uncharacterized protein exosome complex component CSL4 exosome complex component CSL4 uncharacterized LOC102627664 exosome complex component csl4 uncharacterized LOC107796188 uncharacterized LOC107807207
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 3
sly03018 RNA degradation 3
sly03030 DNA replication 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03008 Ribosome biogenesis in eukaryotes 2
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta01200 Carbon metabolism 3
nta00030 Pentose phosphate pathway 2
nta01230 Biosynthesis of amino acids 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 4
nta00030 Pentose phosphate pathway 2
nta01200 Carbon metabolism 2
nta01230 Biosynthesis of amino acids 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833880 100796154 101246918 4331133 100281965 103831079 18104099 25484620 123113056 123125419 123451932 121203562 107936888 111199501 106426214 5726326 8056440 107058202 102627664 100834661 107796188 107807207
The preparation time of this page was 0.1 [sec].