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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106427363   transcription initiation factor IIA subunit 2-like 
 bna-r.1   106427801   transcription initiation factor IIA subunit 2-like 
 bna-r.1   106442013   transcription initiation factor IIA subunit 2 
 bna-r.1   106348930   transcription initiation factor IIA subunit 2-like 
 bra-r.6   103862092   transcription initiation factor IIA subunit 2 
 bra-r.6   103834905   transcription initiation factor IIA subunit 2 
 ath-u.5   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ghi-r.1   121217892   transcription initiation factor IIA subunit 2 
 ghi-r.1   121229031   transcription initiation factor IIA subunit 2 
 ghi-r.1   107905137   transcription initiation factor IIA subunit 2 
 cit-r.1   102608588   transcription initiation factor IIA subunit 2 
 gma-u.5   100810792   transcription initiation factor IIA subunit 2 
 gma-u.5   100814623   transcription initiation factor IIA subunit 2 
 vvi-u.5   100242052   transcription initiation factor IIA subunit 2-like 
 ppo-u.5   7490310   transcription initiation factor IIA subunit 2 
 mtr-u.5   11428884   transcription initiation factor IIA subunit 2 
 mtr-u.5   11419402   transcription initiation factor IIA subunit 2 
 sly-u.5   101250286   transcription initiation factor IIA subunit 2 
 sot-r.1   102583950   transcription initiation factor IIA subunit 2 
 nta-r.1   107807117   transcription initiation factor IIA subunit 2 
 nta-r.1   107806433   transcription initiation factor IIA subunit 2 
 osa-u.5   4323838   transcription initiation factor IIA subunit 2 
 osa-u.5   4337575   transcription initiation factor IIA subunit 2-like 
 zma-u.5   109944853   transcription initiation factor IIA subunit 2 
 zma-u.5   100286346   Transcription initiation factor IIA subunit 2 
 hvu-r.1   123438363   transcription initiation factor IIA subunit 2 
 sbi-r.1   8074132   transcription initiation factor IIA subunit 2 
 sbi-r.1   8067879   transcription initiation factor IIA subunit 2 
 bdi-r.1   100828994   transcription initiation factor IIA subunit 2 
 bdi-r.1   100837665   uncharacterized LOC100837665 
 cre-r.1   CHLRE_10g424150v5   uncharacterized protein 

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Top 50 coexpressed genes to 106427363 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106427363 (bna-r.1 coexpression data)

CoexMap"106427363"


bnaLOC106427363 | Entrez gene ID : 106427363    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 4 2 1 3 1 2 1 1 2 1 1 2 2 2 1 2 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (34 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO CC
GO:0005672 [list] [network] transcription factor TFIIA complex  (14 genes)  IEA  
GO MF
GO:0017025 [list] [network] TBP-class protein binding  (43 genes)  IEA  
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (57 genes)  IEA  
Protein XP_013723546.1 [sequence] [blastp]
XP_013723547.1 [sequence] [blastp]
XP_022567949.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_013723546.1)
nucl 4,  cyto 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_013723547.1)
nucl 4,  cyto 2,  chlo 1,  mito 1,  plas 1,  chlo_mito 1,  mito_plas 1  (predict for XP_022567949.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013723546.1)
other 7  (predict for XP_013723547.1)
other 7  (predict for XP_022567949.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106427363
bna-r.1
for
106427801
bna-r.1
for
106442013
bna-r.1
for
106348930
bra-r.6
for
103862092
bra-r.6
for
103834905
ath-u.5
for
AT4G24440
ghi-r.1
for
121217892
ghi-r.1
for
121229031
ghi-r.1
for
107905137
cit-r.1
for
102608588
gma-u.5
for
100810792
gma-u.5
for
100814623
vvi-u.5
for
100242052
ppo-u.5
for
7490310
mtr-u.5
for
11428884
mtr-u.5
for
11419402
sly-u.5
for
101250286
sot-r.1
for
102583950
nta-r.1
for
107807117
nta-r.1
for
107806433
osa-u.5
for
4323838
osa-u.5
for
4337575
zma-u.5
for
109944853
zma-u.5
for
100286346
hvu-r.1
for
123438363
sbi-r.1
for
8074132
sbi-r.1
for
8067879
bdi-r.1
for
100828994
bdi-r.1
for
100837665
cre-r.1
for
CHLRE_10g424150v5


Ortholog ID: 3604
Species bna bna bna bra bra ath ghi ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta osa osa zma zma tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC106442013 LOC106444604 LOC106394423 LOC103862092 LOC103834905 AT4G24440 LOC121217892 LOC107905137 LOC107957838 LOC102608588 LOC100810792 LOC100814623 LOC100242052 LOC7490310 LOC11428884 LOC11419402 LOC101250286 LOC102583950 LOC107807117 LOC107806433 LOC4323838 LOC4337575 LOC109944853 LOC100286346 LOC123080977 LOC123438363 LOC123442981 LOC8074132 LOC8067879 LOC100828994 LOC100837665 CHLRE_10g424150v5
Function* transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 Transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 uncharacterized LOC100837665 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03022 Basal transcription factors 3
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03022 Basal transcription factors 2
mtr03040 Spliceosome 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 3
nta03022 Basal transcription factors 2
nta03050 Proteasome 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03040 Spliceosome 3
nta03010 Ribosome 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 5
zma03040 Spliceosome 3
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106442013 106444604 106394423 103862092 103834905 828546 121217892 107905137 107957838 102608588 100810792 100814623 100242052 7490310 11428884 11419402 101250286 102583950 107807117 107806433 4323838 4337575 109944853 100286346 123080977 123438363 123442981 8074132 8067879 100828994 100837665 5728216
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