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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8067879   transcription initiation factor IIA subunit 2 
 sbi-r.1   8074132   transcription initiation factor IIA subunit 2 
 zma-u.5   109944853   transcription initiation factor IIA subunit 2 
 zma-u.5   100286346   Transcription initiation factor IIA subunit 2 
 osa-u.5   4323838   transcription initiation factor IIA subunit 2 
 osa-u.5   4337575   transcription initiation factor IIA subunit 2-like 
 hvu-r.1   123442981   transcription initiation factor IIA subunit 2-like 
 bdi-r.1   100828994   transcription initiation factor IIA subunit 2 
 bdi-r.1   100837665   uncharacterized LOC100837665 
 ath-u.5   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 gma-u.5   100814623   transcription initiation factor IIA subunit 2 
 gma-u.5   100810792   transcription initiation factor IIA subunit 2 
 sly-u.5   101250286   transcription initiation factor IIA subunit 2 
 bra-r.6   103834905   transcription initiation factor IIA subunit 2 
 bra-r.6   103862092   transcription initiation factor IIA subunit 2 
 vvi-u.5   100242052   transcription initiation factor IIA subunit 2-like 
 ppo-u.5   7490310   transcription initiation factor IIA subunit 2 
 mtr-u.5   11419402   transcription initiation factor IIA subunit 2 
 mtr-u.5   11428884   transcription initiation factor IIA subunit 2 
 ghi-r.1   121217892   transcription initiation factor IIA subunit 2 
 ghi-r.1   107957838   transcription initiation factor IIA subunit 2 
 ghi-r.1   121229031   transcription initiation factor IIA subunit 2 
 bna-r.1   106348930   transcription initiation factor IIA subunit 2-like 
 bna-r.1   106394423   transcription initiation factor IIA subunit 2 
 bna-r.1   106427363   transcription initiation factor IIA subunit 2-like 
 sot-r.1   102583950   transcription initiation factor IIA subunit 2 
 cit-r.1   102608588   transcription initiation factor IIA subunit 2 
 nta-r.1   107807117   transcription initiation factor IIA subunit 2 
 nta-r.1   107806433   transcription initiation factor IIA subunit 2 
 cre-r.1   CHLRE_10g424150v5   uncharacterized protein 

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Top 50 coexpressed genes to 8067879 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8067879 (sbi-r.1 coexpression data)

CoexMap"8067879"


sbiLOC8067879 | Entrez gene ID : 8067879      
Species sbi zma osa hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre tae
Paralog 2 2 2 1 2 1 2 1 2 1 1 2 3 3 1 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03022 [list] [network] Basal transcription factors (45 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (11 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (34 genes)  IEA  
GO CC
GO:0005672 [list] [network] transcription factor TFIIA complex  (3 genes)  IEA  
GO MF
GO:0017025 [list] [network] TBP-class protein binding  (11 genes)  IEA  
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (19 genes)  IEA  
Protein XP_002440415.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  cyto 2,  nucl_plas 2  (predict for XP_002440415.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002440415.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8067879
sbi-r.1
for
8074132
zma-u.5
for
109944853
zma-u.5
for
100286346
osa-u.5
for
4323838
osa-u.5
for
4337575
hvu-r.1
for
123442981
bdi-r.1
for
100828994
bdi-r.1
for
100837665
ath-u.5
for
AT4G24440
gma-u.5
for
100814623
gma-u.5
for
100810792
sly-u.5
for
101250286
bra-r.6
for
103834905
bra-r.6
for
103862092
vvi-u.5
for
100242052
ppo-u.5
for
7490310
mtr-u.5
for
11419402
mtr-u.5
for
11428884
ghi-r.1
for
121217892
ghi-r.1
for
107957838
ghi-r.1
for
121229031
bna-r.1
for
106348930
bna-r.1
for
106394423
bna-r.1
for
106427363
sot-r.1
for
102583950
cit-r.1
for
102608588
nta-r.1
for
107807117
nta-r.1
for
107806433
cre-r.1
for
CHLRE_10g424150v5


Ortholog ID: 3604
Species sbi sbi zma zma osa osa tae hvu hvu bdi bdi ath gma gma sly bra bra vvi ppo mtr mtr ghi ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC8067879 LOC8074132 LOC109944853 LOC100286346 LOC4323838 LOC4337575 LOC123080977 LOC123442981 LOC123438363 LOC100828994 LOC100837665 AT4G24440 LOC100814623 LOC100810792 LOC101250286 LOC103834905 LOC103862092 LOC100242052 LOC7490310 LOC11419402 LOC11428884 LOC121217892 LOC107957838 LOC107905137 LOC106394423 LOC106444604 LOC106442013 LOC102583950 LOC102608588 LOC107807117 LOC107806433 CHLRE_10g424150v5
Function* transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 Transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 uncharacterized LOC100837665 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 5
zma03040 Spliceosome 3
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03022 Basal transcription factors 2
mtr03040 Spliceosome 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03022 Basal transcription factors 3
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 3
nta03022 Basal transcription factors 2
nta03050 Proteasome 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03040 Spliceosome 3
nta03010 Ribosome 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8067879 8074132 109944853 100286346 4323838 4337575 123080977 123442981 123438363 100828994 100837665 828546 100814623 100810792 101250286 103834905 103862092 100242052 7490310 11419402 11428884 121217892 107957838 107905137 106394423 106444604 106442013 102583950 102608588 107807117 107806433 5728216
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