ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106428104	E3 ubiquitin-protein ligase COP1
ath-u.5	AT3G07200	RING/U-box superfamily protein
ath-u.5	AT5G48655	RING/U-box superfamily protein
gma-u.5	100792853	E3 ubiquitin-protein ligase RNF4
gma-u.5	100778432	E3 ubiquitin-protein ligase RNF4
gma-u.5	100306616	uncharacterized LOC100306616
vvi-u.5	100262402	uncharacterized LOC100262402
vvi-u.5	100246586	uncharacterized LOC100246586
ppo-u.5	7463430	uncharacterized LOC7463430
ppo-u.5	18096550	uncharacterized LOC18096550
mtr-u.5	112416066	E3 ubiquitin-protein ligase RNF8
mtr-u.5	25492825	E3 ubiquitin-protein ligase RNF4
sly-u.5	101256594	uncharacterized LOC101256594
sly-u.5	101249295	uncharacterized LOC101249295
osa-u.5	107276681	uncharacterized LOC107276681
osa-u.5	4324365	uncharacterized LOC4324365
osa-u.5	4347500	E3 ubiquitin-protein ligase RNF4
zma-u.5	100502508	RING/U-box superfamily protein
zma-u.5	100194198	RING/U-box superfamily protein
zma-u.5	100282619	ubiquitin-protein ligase/ zinc ion binding protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_013724304.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, mito 1, plas 1, cysk_nucl 1, mito_plas 1

(predict for XP_013724304.2)

Subcellular
localization
TargetP

mito 7, other 5

(predict for XP_013724304.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106428104	ath-u.5 for AT3G07200	ath-u.5 for AT5G48655	gma-u.5 for 100792853	gma-u.5 for 100778432	gma-u.5 for 100306616	vvi-u.5 for 100262402	vvi-u.5 for 100246586	ppo-u.5 for 7463430	ppo-u.5 for 18096550	mtr-u.5 for 112416066	mtr-u.5 for 25492825	sly-u.5 for 101256594	sly-u.5 for 101249295	osa-u.5 for 107276681	osa-u.5 for 4324365	osa-u.5 for 4347500	zma-u.5 for 100502508	zma-u.5 for 100194198	zma-u.5 for 100282619

Ortholog

Ortholog ID: 1384

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

E3 ubiquitin-protein ligase RNF4

E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8

E3 ubiquitin-protein ligase RNF4

probable E3 ubiquitin-protein ligase DTX3

RING/U-box superfamily protein

E3 ubiquitin-protein ligase RNF4

uncharacterized LOC102607650

E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8-like

E3 ubiquitin-protein ligase RNF4

uncharacterized LOC100306616

uncharacterized LOC100262402

uncharacterized LOC100246586

uncharacterized LOC7463430

uncharacterized LOC18096550

E3 ubiquitin-protein ligase RNF8

uncharacterized LOC101249295

uncharacterized LOC101256594

E3 ubiquitin-protein ligase RNF4-like

uncharacterized LOC107805214

uncharacterized LOC107827757

uncharacterized LOC4324365

E3 ubiquitin-protein ligase RNF4

RING/U-box superfamily protein

E3 ubiquitin-protein ligase BRE1A

E3 ubiquitin-protein ligase RNF4

E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8-like

E3 ubiquitin-protein ligase RNF4

E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04120	Ubiquitin mediated proteolysis	2
ath03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00541	Biosynthesis of various nucleotide sugars	2
ath01250	Biosynthesis of nucleotide sugars	2
ath00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	6
ghi04626	Plant-pathogen interaction	6
ghi04144	Endocytosis	2
ghi04016	MAPK signaling pathway - plant	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	4
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma01232	Nucleotide metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo04120	Ubiquitin mediated proteolysis	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa04148	Efferocytosis	3
osa04130	SNARE interactions in vesicular transport	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma04075	Plant hormone signal transduction	2
zma03022	Basal transcription factors	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi03040	Spliceosome	2
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi04120	Ubiquitin mediated proteolysis	3
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

106410811

106365804

103837260

103874974

834923

819908

107924480

107955252

102607650

102621355

100792853

100306616

100262402

100246586

7463430

18096550

112416066

101249295

101256594

102601266

107805214

107827757

4324365

4347500

100194198

100502508

100682522

123104288

123399707

8058967

8059363

104583742

100845167

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106428104 (bna-r.1 coexpression data)

Top 50 enrichment test to 106428104 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	3	2	2	2	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106428104 (bna-r.1 coexpression data)

Top 50 enrichment test to 106428104 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**