ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106432061	60S ribosomal protein L7-2
ath-u.5	AT2G01250	Ribosomal protein L30/L7 family protein
ath-u.5	AT2G44120	Ribosomal protein L30/L7 family protein
ath-u.5	AT3G13580	Ribosomal protein L30/L7 family protein
gma-u.5	100500005	ribosomal L30 N-terminal domain-containing protein
gma-u.5	100500011	60S ribosomal protein L7-4
gma-u.5	100306213	60S ribosomal protein L7-4
vvi-u.5	104880426	large ribosomal subunit protein uL30y
ppo-u.5	7497794	60S ribosomal protein L7-4
ppo-u.5	7487064	60S ribosomal protein L7-1
ppo-u.5	7478297	60S ribosomal protein L7-1
mtr-u.5	11410884	60S ribosomal protein L7-1
mtr-u.5	11440629	60S ribosomal protein L7-2
mtr-u.5	25482160	60S ribosomal protein L7-2
sly-u.5	101258378	large ribosomal subunit protein uL30y
sly-u.5	101251486	ribosomal protein L30/L7 family protein
sly-u.5	101260624	large ribosomal subunit protein uL30w
osa-u.5	4336914	large ribosomal subunit protein uL30x
osa-u.5	4346195	large ribosomal subunit protein uL30z
osa-u.5	4345009	large ribosomal subunit protein uL30x
zma-u.5	100285130	60S ribosomal protein L7-like
zma-u.5	103637734	uncharacterized LOC103637734
zma-u.5	100281971	60S ribosomal protein L7-like

Top 50 coexpressed genes to 106432061 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106432061 (bna-r.1 coexpression data)

CoexMap"106432061"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03010 [list] [network] Ribosome (7497 genes)

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

(66 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit

(492 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome	(1340 genes)	IEA
GO:0003723 [list] [network] RNA binding	(3852 genes)	IEA

Protein

XP_013728361.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 1, nucl 1, E.R. 1

(predict for XP_013728361.1)

Subcellular
localization
TargetP

other 8

(predict for XP_013728361.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106432061	ath-u.5 for AT2G01250	ath-u.5 for AT2G44120	ath-u.5 for AT3G13580	gma-u.5 for 100500005	gma-u.5 for 100500011	gma-u.5 for 100306213	vvi-u.5 for 104880426	ppo-u.5 for 7497794	ppo-u.5 for 7487064	ppo-u.5 for 7478297	mtr-u.5 for 11410884	mtr-u.5 for 11440629	mtr-u.5 for 25482160	sly-u.5 for 101258378	sly-u.5 for 101251486	sly-u.5 for 101260624	osa-u.5 for 4336914	osa-u.5 for 4346195	osa-u.5 for 4345009	zma-u.5 for 100285130	zma-u.5 for 103637734	zma-u.5 for 100281971

Ortholog

Ortholog ID: 662

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

60S ribosomal protein L7-2

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2

60S ribosomal protein L7-3

Ribosomal protein L30/L7 family protein

60S ribosomal protein L7-4

60S ribosomal protein L7-4-like

60S ribosomal protein L7-1

ribosomal protein L30/L7 family protein

60S ribosomal protein L7-4-like

large ribosomal subunit protein uL30y

60S ribosomal protein L7-1

60S ribosomal protein L7-3

60S ribosomal protein L7-4

60S ribosomal protein L7-2

large ribosomal subunit protein uL30x

large ribosomal subunit protein uL30w

60S ribosomal protein L7-1

putative 60S ribosomal protein L7-like protein

large ribosomal subunit protein uL30w-like

large ribosomal subunit protein uL30y-like

large ribosomal subunit protein uL30x

large ribosomal subunit protein uL30z

60S ribosomal protein L7-like

60S ribosomal protein L7-2

60S ribosomal protein L7-2-like

60S ribosomal protein L7-3-like

60S ribosomal protein L7-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	13
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	18
sly03008	Ribosome biogenesis in eukaryotes	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03040	Spliceosome	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3
tae03020	RNA polymerase	2
tae03420	Nucleotide excision repair	2
tae03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03040	Spliceosome	3
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	20

Expression

Expression pattern

Entrez Gene ID^*

106436885

106429206

103839500

103866124

814652

819018

107889153

107949068

102614577

102629979

100305682

100813342

100267028

104880426

7478297

7485495

25491242

25482160

101261844

101260624

102600208

102577695

107767555

107767309

4336914

4346195

100281870

100192863

123170310

123152152

123427688

123452832

110436898

110436942

100845883

100829822

5718458

The preparation time of this page was 0.2 [sec].


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	3	1	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106432061 (bna-r.1 coexpression data)

Top 50 enrichment test to 106432061 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**