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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106438770   transcription initiation factor IIF subunit alpha-like 
 ath-u.5   RAP74   transcription initiation factor IIF subunit alpha RAP74 
 gma-u.5   100813730   transcription initiation factor IIF subunit alpha 
 gma-u.5   100812247   transcription initiation factor IIF subunit alpha 
 vvi-u.5   100253654   transcription initiation factor IIF subunit alpha 
 ppo-u.5   7458490   transcription initiation factor IIF subunit alpha 
 ppo-u.5   7453709   transcription initiation factor IIF subunit alpha 
 mtr-u.5   11406415   transcription initiation factor IIF subunit alpha 
 mtr-u.5   11405916   transcription initiation factor IIF subunit alpha 
 sly-u.5   101254156   transcription initiation factor IIF subunit alpha 
 osa-u.5   4348225   transcription initiation factor IIF subunit alpha 
 osa-u.5   9266910   transcription initiation factor IIF subunit alpha 
 zma-u.5   103639350   transcription initiation factor IIF subunit alpha 
 zma-u.5   100282440   uncharacterized LOC100282440 

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Top 50 coexpressed genes to 106438770 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106438770 (bna-r.1 coexpression data)

CoexMap"106438770"


bnaLOC106438770 | Entrez gene ID : 106438770    
Species bna ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre nta bdi bra
Paralog 1 1 2 1 2 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03022 [list] [network] Basal transcription factors (161 genes)
GO BP
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II  (88 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (114 genes)  IEA  
GO CC
GO:0005674 [list] [network] transcription factor TFIIF complex  (16 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0001096 [list] [network] TFIIF-class transcription factor complex binding  (4 genes)  IEA  
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (57 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048632019.1 [sequence] [blastp]
XP_048632020.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_048632019.1)
nucl 6,  chlo 2,  cyto 1  (predict for XP_048632020.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_048632019.1)
other 5  (predict for XP_048632020.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106438770

.
ath-u.5
for
RAP74

.
gma-u.5
for
100813730

.
gma-u.5
for
100812247

.
vvi-u.5
for
100253654

.
ppo-u.5
for
7458490

.
ppo-u.5
for
7453709

.
mtr-u.5
for
11406415

.
mtr-u.5
for
11405916

.
sly-u.5
for
101254156

.
osa-u.5
for
4348225

.
osa-u.5
for
9266910

.
zma-u.5
for
103639350

.
zma-u.5
for
100282440

.


Ortholog ID: 5791
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol RAP74 LOC100813730 LOC100812247 LOC101254156 LOC4348225 LOC9266910 LOC103639350 LOC100282440 LOC103839874 LOC103858644 LOC100253654 LOC7453709 LOC7458490 LOC11406415 LOC11405916 LOC123118340 LOC123092746 LOC123449141 LOC123428937 LOC107907951 LOC107963099 LOC106381585 LOC106438770 LOC8054334 LOC102599174 LOC102629224 LOC100846625 LOC107777849 LOC107811290
Function* transcription initiation factor IIF subunit alpha RAP74 transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha uncharacterized LOC100282440 transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha-like transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha-like transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha transcription initiation factor IIF subunit alpha
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03022 Basal transcription factors 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa04120 Ubiquitin mediated proteolysis 2
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03022 Basal transcription factors 2
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03015 mRNA surveillance pathway 2
hvu03022 Basal transcription factors 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta04141 Protein processing in endoplasmic reticulum 4
nta03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03022 Basal transcription factors 5
nta04141 Protein processing in endoplasmic reticulum 4
nta03420 Nucleotide excision repair 3
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826874 100813730 100812247 101254156 4348225 9266910 103639350 100282440 103839874 103858644 100253654 7453709 7458490 11406415 11405916 123118340 123092746 123449141 123428937 107907951 107963099 106381585 106438770 8054334 102599174 102629224 100846625 107777849 107811290
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