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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106439086   uncharacterized protein At3g06530 
 bna-r.1   106400726   uncharacterized protein At3g06530 
 bna-r.1   106431764   uncharacterized protein At3g06530 
 bna-r.1   106452995   uncharacterized protein At3g06530-like 
 bra-r.6   103870740   uncharacterized protein At3g06530 
 bra-r.6   103859164   uncharacterized protein At3g06530 
 ath-u.5   AT3G06530   ARM repeat superfamily protein 
 ghi-r.1   107913189   uncharacterized protein At3g06530 
 ghi-r.1   107953622   uncharacterized protein At3g06530 
 cit-r.1   102629141   uncharacterized protein At3g06530 
 gma-u.5   100798087   uncharacterized protein At3g06530 
 gma-u.5   100796965   uncharacterized protein At3g06530 
 vvi-u.5   100256070   uncharacterized protein At3g06530 
 ppo-u.5   18097079   uncharacterized protein At3g06530 
 mtr-u.5   11431978   uncharacterized protein At3g06530 
 sly-u.5   101267297   uncharacterized protein At3g06530 
 sot-r.1   102587093   uncharacterized protein At3g06530 
 nta-r.1   107793828   uncharacterized protein At3g06530 
 nta-r.1   107795963   uncharacterized protein At3g06530 
 osa-u.5   4336577   uncharacterized protein At3g06530 
 zma-u.5   100193917   uncharacterized LOC100193917 
 tae-r.2   123046413   uncharacterized protein At3g06530 
 tae-r.2   123054255   uncharacterized protein At3g06530 
 tae-r.2   123190147   uncharacterized protein At3g06530 
 hvu-r.1   123427577   uncharacterized protein At3g06530 
 sbi-r.1   8075108   uncharacterized protein At3g06530 
 bdi-r.1   100833028   uncharacterized protein At3g06530 
 cre-r.1   CHLRE_12g548000v5   uncharacterized protein 

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Top 50 coexpressed genes to 106439086 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106439086 (bna-r.1 coexpression data)

CoexMap"106439086"


bnaLOC106439086 | Entrez gene ID : 106439086    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03008 [list] [network] Ribosome biogenesis in eukaryotes (6477 genes)
GO BP
GO:0045943 [list] [network] positive regulation of transcription by RNA polymerase I  (12 genes)  IEA  
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (142 genes)  IEA  
GO CC
GO:0034455 [list] [network] t-UTP complex  (4 genes)  IEA  
GO:0030686 [list] [network] 90S preribosome  (123 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (155 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (74 genes)  IEA  
Protein XP_048632263.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 1,  vacu 1,  mito 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_048632263.1)
Subcellular
localization
TargetP
chlo 4,  scret 3  (predict for XP_048632263.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106439086
bna-r.1
for
106400726
bna-r.1
for
106431764
bna-r.1
for
106452995
bra-r.6
for
103870740
bra-r.6
for
103859164
ath-u.5
for
AT3G06530
ghi-r.1
for
107913189
ghi-r.1
for
107953622
cit-r.1
for
102629141
gma-u.5
for
100798087
gma-u.5
for
100796965
vvi-u.5
for
100256070
ppo-u.5
for
18097079
mtr-u.5
for
11431978
sly-u.5
for
101267297
sot-r.1
for
102587093
nta-r.1
for
107793828
nta-r.1
for
107795963
osa-u.5
for
4336577
zma-u.5
for
100193917
tae-r.2
for
123046413
tae-r.2
for
123054255
tae-r.2
for
123190147
hvu-r.1
for
123427577
sbi-r.1
for
8075108
bdi-r.1
for
100833028
cre-r.1
for
CHLRE_12g548000v5


Ortholog ID: 8444
Species bna bna bna bra bra ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC106439086 LOC106431764 LOC106452995 LOC103870740 LOC103859164 AT3G06530 LOC107913189 LOC107953622 LOC102629141 LOC100798087 LOC100796965 LOC100256070 LOC18097079 LOC11431978 LOC101267297 LOC102587093 LOC107793828 LOC107795963 LOC4336577 LOC100193917 LOC123046413 LOC123054255 LOC123190147 LOC123427577 LOC8075108 LOC100833028 CHLRE_12g548000v5
Function* uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530-like uncharacterized protein At3g06530 uncharacterized protein At3g06530 ARM repeat superfamily protein uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized LOC100193917 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein At3g06530 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03020 RNA polymerase 4
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03020 RNA polymerase 2
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta03020 RNA polymerase 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03013 Nucleocytoplasmic transport 3
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03020 RNA polymerase 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 2
tae03018 RNA degradation 2
tae03030 DNA replication 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106439086 106431764 106452995 103870740 103859164 819831 107913189 107953622 102629141 100798087 100796965 100256070 18097079 11431978 101267297 102587093 107793828 107795963 4336577 100193917 123046413 123054255 123190147 123427577 8075108 100833028 5719616
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