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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106440049   vacuolar protein sorting-associated protein 28 homolog 1 
 bna-r.1   106433748   vacuolar protein sorting-associated protein 28 homolog 1-like 
 bna-r.1   106376387   vacuolar protein sorting-associated protein 28 homolog 2 
 bna-r.1   106375726   vacuolar protein sorting-associated protein 28 homolog 1 
 bra-r.6   103839783   vacuolar protein sorting-associated protein 28 homolog 2 
 bra-r.6   103834189   vacuolar protein sorting-associated protein 28 homolog 1 
 bra-r.6   103859151   vacuolar protein sorting-associated protein 28 homolog 1 
 ath-u.5   VPS28-2   Vacuolar protein sorting-associated protein VPS28 family protein 
 ath-u.5   VPS28-1   vacuolar protein sorting-associated protein-like protein 
 ghi-r.1   121222288   vacuolar protein sorting-associated protein 28 homolog 2 
 ghi-r.1   107891792   vacuolar protein sorting-associated protein 28 homolog 1 
 cit-r.1   102625108   vacuolar protein sorting-associated protein 28 homolog 2 
 gma-u.5   100500366   vacuolar protein sorting-associated protein 28 homolog 2 
 gma-u.5   100814037   vacuolar protein sorting-associated protein 28 homolog 2 
 vvi-u.5   100261868   vacuolar protein sorting-associated protein 28 homolog 2 
 ppo-u.5   7494341   vacuolar protein sorting-associated protein 28 homolog 1 
 ppo-u.5   7495265   vacuolar protein sorting-associated protein 28 homolog 1 
 mtr-u.5   11439388   vacuolar protein sorting-associated protein 28 homolog 1 
 sly-u.5   101258121   vacuolar protein sorting-associated protein 28 homolog 2 
 sly-u.5   101255562   vacuolar protein sorting-associated protein 28 homolog 2-like 
 sot-r.1   102591419   vacuolar protein sorting-associated protein 28 homolog 2-like 
 sot-r.1   102587158   vacuolar protein sorting-associated protein 28 homolog 2 
 nta-r.1   107830635   vacuolar protein sorting-associated protein 28 homolog 2 
 nta-r.1   107826798   vacuolar protein sorting-associated protein 28 homolog 2 
 nta-r.1   107784161   vacuolar protein sorting-associated protein 28 homolog 2-like 
 osa-u.5   4327840   vacuolar protein sorting-associated protein 28 homolog 1 
 zma-u.5   100284642   VPS28-like protein 
 zma-u.5   103651140   vacuolar protein sorting-associated protein 28 homolog 1 
 tae-r.2   123071007   vacuolar protein sorting-associated protein 28 homolog 1 
 tae-r.2   123062252   vacuolar protein sorting-associated protein 28 homolog 1 
 tae-r.2   123079382   vacuolar protein sorting-associated protein 28 homolog 1 
 sbi-r.1   8082356   vacuolar protein sorting-associated protein 28 homolog 1 
 bdi-r.1   106865427   vacuolar protein sorting-associated protein 28 homolog 1 
 cre-r.1   CHLRE_16g678100v5   uncharacterized protein 

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Top 50 coexpressed genes to 106440049 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106440049 (bna-r.1 coexpression data)

CoexMap"106440049"


bnaLOC106440049 | Entrez gene ID : 106440049    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae sbi bdi cre hvu
Paralog 4 3 2 2 1 2 1 2 1 2 2 3 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna04144 [list] [network] Endocytosis (511 genes)
GO BP
GO:0043328 [list] [network] protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  (56 genes)  IEA  
GO CC
GO:0000813 [list] [network] ESCRT I complex  (24 genes)  IEA  
GO MF
GO:0044877 [list] [network] protein-containing complex binding  (689 genes)  IEA  
Protein XP_013737089.1 [sequence] [blastp]
XP_013737100.1 [sequence] [blastp]
XP_013737107.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  nucl_plas 3,  cyto 1,  plas 1  (predict for XP_013737089.1)
chlo 4,  nucl 3,  nucl_plas 3,  cyto 1,  plas 1  (predict for XP_013737100.1)
chlo 4,  nucl 3,  nucl_plas 3,  cyto 1,  plas 1  (predict for XP_013737107.1)
Subcellular
localization
TargetP
other 9  (predict for XP_013737089.1)
other 9  (predict for XP_013737100.1)
other 9  (predict for XP_013737107.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106440049
bna-r.1
for
106433748
bna-r.1
for
106376387
bna-r.1
for
106375726
bra-r.6
for
103839783
bra-r.6
for
103834189
bra-r.6
for
103859151
ath-u.5
for
VPS28-2
ath-u.5
for
VPS28-1
ghi-r.1
for
121222288
ghi-r.1
for
107891792
cit-r.1
for
102625108
gma-u.5
for
100500366
gma-u.5
for
100814037
vvi-u.5
for
100261868
ppo-u.5
for
7494341
ppo-u.5
for
7495265
mtr-u.5
for
11439388
sly-u.5
for
101258121
sly-u.5
for
101255562
sot-r.1
for
102591419
sot-r.1
for
102587158
nta-r.1
for
107830635
nta-r.1
for
107826798
nta-r.1
for
107784161
osa-u.5
for
4327840
zma-u.5
for
100284642
zma-u.5
for
103651140
tae-r.2
for
123071007
tae-r.2
for
123062252
tae-r.2
for
123079382
sbi-r.1
for
8082356
bdi-r.1
for
106865427
cre-r.1
for
CHLRE_16g678100v5


Ortholog ID: 4756
Species bna bna bna bra bra bra ath ath ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae sbi bdi cre
Symbol LOC106440049 LOC106375726 LOC106364465 LOC103839783 LOC103834189 LOC103859151 VPS28-2 VPS28-1 LOC107891792 LOC107925293 LOC102625108 LOC100500366 LOC100814037 LOC100261868 LOC7494341 LOC7495265 LOC11439388 LOC101258121 LOC101255562 LOC102591419 LOC102587158 LOC107830635 LOC107826798 LOC107769174 LOC4327840 LOC100284642 LOC103651140 LOC123071007 LOC123062252 LOC123079382 LOC8082356 LOC106865427 CHLRE_16g678100v5
Function* vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 Vacuolar protein sorting-associated protein VPS28 family protein vacuolar protein sorting-associated protein-like protein vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2-like vacuolar protein sorting-associated protein 28 homolog 2-like vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 2 vacuolar protein sorting-associated protein 28 homolog 1 VPS28-like protein vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 vacuolar protein sorting-associated protein 28 homolog 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna00230 Purine metabolism 2
bna01232 Nucleotide metabolism 2
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna00230 Purine metabolism 2
bna01232 Nucleotide metabolism 2
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04075 Plant hormone signal transduction 2
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
bra04141 Protein processing in endoplasmic reticulum 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 9
ghi03272 Virion - Hepatitis viruses 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 6
ghi03272 Virion - Hepatitis viruses 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 5
cit04141 Protein processing in endoplasmic reticulum 3
cit04130 SNARE interactions in vesicular transport 2
cit03060 Protein export 2
cit03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 5
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 4
ppo04626 Plant-pathogen interaction 3
ppo04120 Ubiquitin mediated proteolysis 3
ppo03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04144 Endocytosis 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
mtr04144 Endocytosis 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 6
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 10
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta00965 Betalain biosynthesis 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 10
nta03272 Virion - Hepatitis viruses 4
nta03250 Viral life cycle - HIV-1 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04144 Endocytosis 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 8
cre03272 Virion - Hepatitis viruses 4
cre04130 SNARE interactions in vesicular transport 3
cre03250 Viral life cycle - HIV-1 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106440049 106375726 106364465 103839783 103834189 103859151 825842 828241 107891792 107925293 102625108 100500366 100814037 100261868 7494341 7495265 11439388 101258121 101255562 102591419 102587158 107830635 107826798 107769174 4327840 100284642 103651140 123071007 123062252 123079382 8082356 106865427 5721514
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