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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106440074   F-box/WD-40 repeat-containing protein At3g52030 
 ath-u.5   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 gma-u.5   100799536   F-box/WD-40 repeat-containing protein At3g52030 
 vvi-u.5   100243045   F-box/WD-40 repeat-containing protein At3g52030 
 ppo-u.5   7482307   F-box/WD-40 repeat-containing protein At3g52030 
 mtr-u.5   11415432   F-box/WD-40 repeat-containing protein At3g52030 
 sly-u.5   101259368   F-box/WD-40 repeat-containing protein At3g52030 
 osa-u.5   4349949   F-box/WD-40 repeat-containing protein At3g52030 
 zma-u.5   100193224   uncharacterized LOC100193224 

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Top 50 coexpressed genes to 106440074 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106440074 (bna-r.1 coexpression data)

CoexMap"106440074"


bnaLOC106440074 | Entrez gene ID : 106440074    
Species bna ath gma vvi ppo mtr sly osa zma nta tae bdi sot bra sbi hvu cit cre ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013737116.1 [sequence] [blastp]
XP_022561970.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  vacu 1  (predict for XP_013737116.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_022561970.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013737116.1)
other 8  (predict for XP_022561970.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106440074

.
ath-u.5
for
AT3G52030

.
gma-u.5
for
100799536

.
vvi-u.5
for
100243045

.
ppo-u.5
for
7482307

.
mtr-u.5
for
11415432

.
sly-u.5
for
101259368

.
osa-u.5
for
4349949

.
zma-u.5
for
100193224

.


Ortholog ID: 11340
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT3G52030 LOC100799536 LOC101259368 LOC4349949 LOC100193224 LOC103860738 LOC100243045 LOC7482307 LOC11415432 LOC123086679 LOC123091301 LOC123447936 LOC107900771 LOC107933948 LOC106440074 LOC106448375 LOC8072777 LOC102578960 LOC102607962 LOC100829039 LOC107797073 LOC107772079
Function* F-box family protein with WD40/YVTN repeat doamin F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 uncharacterized LOC100193224 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030-like F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030-like F-box/WD-40 repeat-containing protein At3g52030
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00620 Pyruvate metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 2
tae00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00350 Tyrosine metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi00670 One carbon pool by folate 2
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824366 100799536 101259368 4349949 100193224 103860738 100243045 7482307 11415432 123086679 123091301 123447936 107900771 107933948 106440074 106448375 8072777 102578960 102607962 100829039 107797073 107772079
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