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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-r.7   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-m.9   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-e.2   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-m.4.bio   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-m.4.hor   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-m.4.lig   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-m.4.str   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 ath-m.4.tis   AT3G52030   F-box family protein with WD40/YVTN repeat doamin 
 bra-r.6   103860738   F-box/WD-40 repeat-containing protein At3g52030 
 bna-r.1   106440074   F-box/WD-40 repeat-containing protein At3g52030 
 bna-r.1   106448375   F-box/WD-40 repeat-containing protein At3g52030 
 ghi-r.1   107933948   F-box/WD-40 repeat-containing protein At3g52030 
 ghi-r.1   107900771   F-box/WD-40 repeat-containing protein At3g52030 
 cit-r.1   102607962   F-box/WD-40 repeat-containing protein At3g52030 
 gma-u.5   100799536   F-box/WD-40 repeat-containing protein At3g52030 
 vvi-u.5   100243045   F-box/WD-40 repeat-containing protein At3g52030 
 ppo-u.5   7482307   F-box/WD-40 repeat-containing protein At3g52030 
 mtr-u.5   11415432   F-box/WD-40 repeat-containing protein At3g52030 
 sly-u.5   101259368   F-box/WD-40 repeat-containing protein At3g52030 
 sot-r.1   102578960   F-box/WD-40 repeat-containing protein At3g52030-like 
 nta-r.1   107797073   F-box/WD-40 repeat-containing protein At3g52030-like 
 nta-r.1   107772079   F-box/WD-40 repeat-containing protein At3g52030 
 osa-u.5   4349949   F-box/WD-40 repeat-containing protein At3g52030 
 zma-u.5   100193224   uncharacterized LOC100193224 
 tae-r.2   123096279   F-box/WD-40 repeat-containing protein At3g52030 
 tae-r.2   123091301   F-box/WD-40 repeat-containing protein At3g52030 
 tae-r.2   123086679   F-box/WD-40 repeat-containing protein At3g52030 
 hvu-r.1   123447936   F-box/WD-40 repeat-containing protein At3g52030 
 sbi-r.1   8072777   F-box/WD-40 repeat-containing protein At3g52030 
 bdi-r.1   100829039   F-box/WD-40 repeat-containing protein At3g52030 

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Top 50 coexpressed genes to AT3G52030 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G52030 (ath-u.5 coexpression data)

CoexMap"824366"


athAT3G52030 | Entrez gene ID : 824366      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001190063.1 [sequence] [blastp]
NP_190771.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  plas 1,  golg_plas 1  (predict for NP_001190063.1)
plas 7,  nucl 1,  E.R. 1  (predict for NP_190771.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001190063.1)
other 8  (predict for NP_190771.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G52030
ath-r.7
for
AT3G52030
ath-m.9
for
AT3G52030
ath-e.2
for
AT3G52030
ath-m.4.bio
for
AT3G52030
ath-m.4.hor
for
AT3G52030
ath-m.4.lig
for
AT3G52030
ath-m.4.str
for
AT3G52030
ath-m.4.tis
for
AT3G52030
bra-r.6
for
103860738
bna-r.1
for
106440074
bna-r.1
for
106448375
ghi-r.1
for
107933948
ghi-r.1
for
107900771
cit-r.1
for
102607962
gma-u.5
for
100799536
vvi-u.5
for
100243045
ppo-u.5
for
7482307
mtr-u.5
for
11415432
sly-u.5
for
101259368
sot-r.1
for
102578960
nta-r.1
for
107797073
nta-r.1
for
107772079
osa-u.5
for
4349949
zma-u.5
for
100193224
tae-r.2
for
123096279
tae-r.2
for
123091301
tae-r.2
for
123086679
hvu-r.1
for
123447936
sbi-r.1
for
8072777
bdi-r.1
for
100829039


Ortholog ID: 11340
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT3G52030 LOC103860738 LOC106440074 LOC106448375 LOC107933948 LOC107900771 LOC102607962 LOC100799536 LOC100243045 LOC7482307 LOC11415432 LOC101259368 LOC102578960 LOC107797073 LOC107772079 LOC4349949 LOC100193224 LOC123096279 LOC123091301 LOC123086679 LOC123447936 LOC8072777 LOC100829039
Function* F-box family protein with WD40/YVTN repeat doamin F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030-like F-box/WD-40 repeat-containing protein At3g52030-like F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 uncharacterized LOC100193224 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030 F-box/WD-40 repeat-containing protein At3g52030
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi00350 Tyrosine metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi00670 One carbon pool by folate 2
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03013 Nucleocytoplasmic transport 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00620 Pyruvate metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 2
tae00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824366 103860738 106440074 106448375 107933948 107900771 102607962 100799536 100243045 7482307 11415432 101259368 102578960 107797073 107772079 4349949 100193224 123096279 123091301 123086679 123447936 8072777 100829039
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